Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4435 ATGGTCCTTCCACATCCACCTACTTCAAGGACCCTCTCTCTTAATGGTAAAGGTTCATTCTCTCCATTGTCAAAGGTTGCCCACTCATTACCGGTTACTCCAATCGCATCTTTGGGTCAAGAAAGTGTACATGGCAGACATCTGGGATGTGCTTCTGATTTAAATTCTAGGGTCTTGATTCGTATCATTTCAGCCAGGCGGCATCTTGCAACTGTTGATGGAACTTCAACTGGTGATTCTTCAGTCATGGAGATTGCTATTGAGGATGTTACAGCAGATATTCCAGAGGAAGAAGCAGTTTGTAGGATTTGTTTGGCAGAGCTCGGGGAAGGAGAGAATACTCTTAAGATGGAATGCAGTTGTAAAGGTGATCTTGCACTTGCTTATCAAGACTGTGCAGTAAAGTGGTTTAGTATTAAGGGCAACAGGACCTGCGATGCCTGCAAGCAGGATGTTCAAAACCTCCCGATAACATTATTGAAAATTTATGATCGTCAACCCCTGCCAGACAGCCACCAAATGTGCCACAACCAAGGGAAATAG 543 0.442 MVLPHPPTSRTLSLNGKGSFSPLSKVAHSLPVTPIASLGQESVHGRHLGCASDLNSRVLIRIISARRHLATVDGTSTGDSSVMEIAIEDVTADIPEEEAVCRICLAELGEGENTLKMECSCKGDLALAYQDCAVKWFSIKGNRTCDACKQDVQNLPITLLKIYDRQPLPDSHQMCHNQGK* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4435 180 Pfam RING-variant domain 101 148 IPR011016 GO:0008270
Amo19g4435 180 SMART ringv_2 100 149 IPR011016 GO:0008270
Amo19g4435 180 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 156 IPR013083 -
Amo19g4435 180 CDD RING_CH-C4HC3_MARCH 101 149 - -
Amo19g4435 180 ProSiteProfiles Zinc finger RING-CH-type profile. 93 155 IPR011016 GO:0008270
Amo19g4435 180 PANTHER OS02G0165000 PROTEIN 6 174 - -
Amo19g4435 180 PANTHER OS02G0165000 PROTEIN 6 174 - -
Amo19g4435 180 SUPERFAMILY RING/U-box 97 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4435 Amo-Chr19 161402941 161404169 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4435 84 155 C3H Transcription Factor Family AT2G37950 43.836 2.39e-11 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4435 - - aip:110265370 307.375