Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4432 ATGAAGCGCATCTGCAGGCAGCATGGGATATCCCGTTGGCCATCTCGAAAGATCAACAAAGTTAACCGTTCCCTGTCCAAGCTCAAGCGTGTTATTGAATCAGTCCAAGGTGCCGAAGGAGCATTCYCTTTGAATCCTCTGAGCACAAGTCCTCTTCCCTTTCCTGAGCATTCTACTCCAAACAAGTTCAGCCAGCAAGCCTCMCCAACTGAACCTCAGATAAGAGAAAATGAATTAGATGCCTCTAAAGTTTTAGAAACAACCAGAATTGCCAGAGCACAGTGTCTCGAGAAAATGGTTAATGATAAAAGCGGTTCTATTCGGGAGGTAGGGAAGGAAACAAAGGGGCCTAGAGCAAAGAGTTGCTCTAGTGCAGATAGCACAAATCCTACTTCTCATGGTTCATGCCATGGTAGCCCTCCTATCGAAAGCTCGCCCGTAAAAGATATATTCATTACATCAAACAATGATCAATGTGTTGGTCTAAGGTCACCAGAGGCAACAATGCAGCCGCCGAATAATACACTGAGCTACCCAACGACTTGCGCTATGCCTGATATGGTGGCAACAGAACTTCAAGAGCCATTCGGAGGAATGCTYGTAGAAGATGCCGGAAGTTCRAAAGACTTGAGAAACCTATGTCCTTCTGTAGCTGAGGCAATTGTGGAGGACATGGCCCCGGAACCTTGCCGGACTAATCCTCCATTTTCTGGGTTGGCTCCCAAYCAATGCATGGATCCCCTTAAGGAGACAGTGACACCTTTTGCAMCTAGAASAGAAATGAAGACTGTCACTATTAAGGCAACATATAGAGAAGATATCATAAGGTTTAGGGTTTCTTTGAATTGTGGAATTGTGGAACTGAAAGAAGAAGTTGCCAAAAGGTTGAAACTAGAAGTAGGTACTTTTGATATCAAGTACCTTGATGATGATCATGAATGGGTTTTGATAGCATGTGATGCAGATCTACAAGAGTGCATAGATGTTTCAAGATCATCAGCAAGTAACATAATAAGAGTTTTGGTGCATGAAATAACTTCCCATCTTGGAAGCTCATGCGAGAGCTCAGGGGAGTAA 1077 0.4373 MKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFXLNPLSTSPLPFPEHSTPNKFSQQASPTEPQIRENELDASKVLETTRIARAQCLEKMVNDKSGSIREVGKETKGPRAKSCSSADSTNPTSHGSCHGSPPIESSPVKDIFITSNNDQCVGLRSPEATMQPPNNTLSYPTTCAMPDMVATELQEPFGGMLVEDAGSSKDLRNLCPSVAEAIVEDMAPEPCRTNPPFSGLAPNQCMDPLKETVTPFAXRXEMKTVTIKATYREDIIRFRVSLNCGIVELKEEVAKRLKLEVGTFDIKYLDDDHEWVLIACDADLQECIDVSRSSASNIIRVLVHEITSHLGSSCESSGE* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4432 358 ProSiteProfiles PB1 domain profile. 263 345 IPR000270 GO:0005515
Amo19g4432 358 Pfam RWP-RK domain 1 21 IPR003035 -
Amo19g4432 358 MobiDBLite consensus disorder prediction 120 139 - -
Amo19g4432 358 SUPERFAMILY CAD & PB1 domains 260 349 - -
Amo19g4432 358 Pfam PB1 domain 263 344 IPR000270 GO:0005515
Amo19g4432 358 MobiDBLite consensus disorder prediction 46 76 - -
Amo19g4432 358 CDD PB1_NLP 264 344 IPR034891 -
Amo19g4432 358 ProSiteProfiles RWP-RK domain profile. 1 41 IPR003035 -
Amo19g4432 358 PANTHER PROTEIN NLP8 1 357 IPR045012 GO:0003700
Amo19g4432 358 SMART PB1_new 263 345 IPR000270 GO:0005515
Amo19g4432 358 MobiDBLite consensus disorder prediction 51 75 - -
Amo19g4432 358 Gene3D - 260 344 - -
Amo19g4432 358 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 1 357 - -
Amo19g4432 358 MobiDBLite consensus disorder prediction 104 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4432 Amo-Chr19 161355529 161356605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4432 1 358 NLP Transcription Factor Family AT4G24020 43.896 3.82e-83 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Amo19g4432 PB1 2.2e-19 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4432 - - aip:107618129 714.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g4432 19 161355529 161356605 Amo09g2822 09 107244024 107247368 hybridization
Amo19g4432 19 161355529 161356605 Amo19g4432 19 161355529 161356605 PCT
Amo19g4432 19 161355529 161356605 Amo09g2822 09 107244024 107247368 PCT
Amo09g2822 09 107244024 107247368 Amo19g4432 19 161355529 161356605 PCT