Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4431 ATGGCTCCTAAGCAGCCAAGTTCGGGTCTGTTCGTCGGAATGAACAAAGGTCACATTGTCACCAAGAAGGAGTTGCCTCCACGTCCCAGGGATCGCAAAGGGAAAACAAGCAAGAGGGTGCACTTTGTAAGGAACCTAATCCGTGAGGTTGCTGGTTTTGCACCTTATGAGAAGCGTATTACTGAGTTGCTCAAGGTTGGAAAGGATAAGAGGGCGCTCAAAGTTGCTAAGAGAAAGCTTGGAACCCACAAGCGTGCTAAGAAGAAGAGAGAGGAGATGTCCACCGTTCTCCGCAAGATGAGGGCTGGTGGAGGTGGAGAGAAGAAGAAATGA 333 0.4955 MAPKQPSSGLFVGMNKGHIVTKKELPPRPRDRKGKTSKRVHFVRNLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSTVLRKMRAGGGGEKKK* 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4431 110 MobiDBLite consensus disorder prediction 87 110 - -
Amo19g4431 110 Gene3D 60S ribosomal protein L36 1 105 IPR038097 -
Amo19g4431 110 PANTHER 60S RIBOSOMAL PROTEIN L36 1 110 IPR000509 GO:0003735|GO:0005840|GO:0006412
Amo19g4431 110 PANTHER 60S RIBOSOMAL PROTEIN L36-1-RELATED 1 110 - -
Amo19g4431 110 MobiDBLite consensus disorder prediction 1 38 - -
Amo19g4431 110 Pfam Ribosomal protein L36e 8 101 IPR000509 GO:0003735|GO:0005840|GO:0006412
Amo19g4431 110 MobiDBLite consensus disorder prediction 80 110 - -
Amo19g4431 110 ProSitePatterns Ribosomal protein L36e signature. 55 65 IPR000509 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4431 Amo-Chr19 161350721 161351789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4431 1 110 Cytoplasmic Ribosomal Protein Gene Family AT3G53740 80.357 2.87e-58 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4431 K02920 - vvi:100262717 208.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g4431 19 161350721 161351789 Amo19g4431 19 161350721 161351789 ECH
Amo19g4431 19 161350721 161351789 Amo09g2821 09 107239843 107240904 hybridization