Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4427 ATGGGTAGCATCCAAKTAGCTGAAGCTGAAGAACAAGACACACACACAGTCTTTGTTGCGGTGGGAAACAACATTCACAAGACCCAACAACTATTGCATTGGGCTTCGCACAATTTCCCTTCCAAATCAATTTGCCTCCTTCACGTTCACCATCCTCACCCTATCGATTCCTCCCCAGATAGAAACCCTTATAGGGATGAAACACGATCTCTTTCATTCTCGGACAATGAAAGTAAAAAAATCCATGAACTCTTGGACCAATATGTTGCCACTCTTGTCCAAACAGGGGTAAGGGCACATAAATTGTTGATTGAGATGGACAATATTGAGAAAGGGATTATGGAAGCTATTGCTCAGCACAATATTAGATTGCTTGTAATTGGAGCTGCAGCAGACAGATATAACTTGGGGAAATTGGCTGAGCAAGAGTCAACAAAGATTATTCCTGTACATAAACAAGCAGTTCCATCATGTAATATTTGGTTCATTTGCAATGGCAACATCAAATGTACCAGGGTAGATAGTAAACGTACACCTGAAATAGAGACTGCCCCTCCACTGTTGGTGTGCAATTCAAATGCAGAAGCCGAACAATCACAGAAGTTTGAATATGAATCGATTCCTAATGGATTGGAACATTTAGATTCTGATGATGTGGAAGAAATTGAAACTGTCAGTTCCCACAGTTCATTACGTTCAAAATGGTCCTCCATTAGTGTTGCTGACAGTTCAAAGTTGTCAGGATTGCTGTTTTGTGAGGAGGAGGTAGATGGTGAAATTGAAGACAAAAGTGAAATAAATGGTAGACTGGAAGAGTCCACTAGAGATTCCAAAAGCATGAGGCGAAAAGAATTTGAAGAGGCTTTAAAGCAGCGGAAAGTCAAAGAAAGTTCTTTGGAGGATGAAGCATTAGAAATGGAAAGCCTGTGTGCTAAGGAGAAAAACAAAAGAAGAGAAGTTGAAGAACAATTAGCTAGAGAGAAGGAAGAATTACAAAAGACAAAGAATCAGCAAGATGAAATAATGTATGAGTTGCAAACTGTCCAAGAACAAAATTCAGCACTTGAGAACCAACTTTCTGAGAGACAGGAAACAGCAAAAGAGTTGGAGGAGAAGATTTTATCAGCTGTGGACCTGTTGATAAGTTTCAAGGAAAAACGAGATAGACTGCAGATAGAGTGTGCAAATGCAGTAAGGCAAGTCCGAGTGCTGAGGGAATTTGGAAAGTCACATACTTCATTTTCTTATGCAGTAGAATTCCCTGTATTTTCTTTCATGGAGATCAATCAGGCAACTAATGATTTTGATCCATCTTGGAAGATTGGAGAAGGAAGATATGGAAGTGTTTACAAAGGAGTGCTTCGCAATATGCATGTTGCTATAAAAATGTTACCTTCTTATGGCTGTCACAGCCAATTGGAGTTTGAACGTCAGGTAGCAGTTTTGAGTCGGGTGAGACATCGAAACCTGTTGACACTGATTGGAACATGTGCCGAGTCTAGGTCACTTGTGTATGAATATCTAAATAATGGCAGCCTTGAAGGTCACCTTGCCCGCAAAGAGAAGTCTCCACTTCCATGGCAAATTCGAATATCCGTTGCTGCTGACATATGTTCTGCTCTAATTTTTCTTCACTCTAGCGAGCCTAGTATTATACATGGGAATTTGAAAGCTAGTAAGGTTCTCCTTGATGCTAACTTTGTTGCCAAACTTGCTGACATTGGCATTCATGGTTTAGTTGAGAAGAATGTGGATTCAGCTCACACAACAATACACAACAAACCAAATGAAAGTTTGGCATATGTTGATCCAGAGTATCTTGCCACTGGCAAATTCACTCCAGAATCGGATGTGTATTCGTTCGGAATCCTGTTGTTGCAACTTCTAACCGGAAGACCACTTTTGGGGCTAGTCAGAGATGTCAAATGTGCATTGGAAAAGGATAACCTTGAAGCAGTATTGGACTTCTCAGCTGGTGAGTGGCCACTTGATCAAACTATACATCTGGCCTATTTAGCATTGAGATGTTGTCACAAGACTTGGCTGAACCGGCCGGACCTCACATCAGATATTTGGGATGTTCTTGAACCATTCAGAACTACATGCATGAACATGCCACCATATTTGACATCCAAGAAACATCGCCGCACTCCATCCCACTTTGTATGCCCCATTGTGCAGGAGGTAATGGAAGATCCGTACATAGCTGCAGATGGCTTTACGTATGAAGCCGAGGCAATAAGAGAATGGTTGGATAGTGGTCACGACACTTCCCCCATGACAAACCTCAAGCTTGAGCACACAAATTTAGTGCCTAATTATGCATTACATAATGCAATTCAAGAATGGCAGCAACTACAGTGA 2364 0.4116 MGSIQXAEAEEQDTHTVFVAVGNNIHKTQQLLHWASHNFPSKSICLLHVHHPHPIDSSPDRNPYRDETRSLSFSDNESKKIHELLDQYVATLVQTGVRAHKLLIEMDNIEKGIMEAIAQHNIRLLVIGAAADRYNLGKLAEQESTKIIPVHKQAVPSCNIWFICNGNIKCTRVDSKRTPEIETAPPLLVCNSNAEAEQSQKFEYESIPNGLEHLDSDDVEEIETVSSHSSLRSKWSSISVADSSKLSGLLFCEEEVDGEIEDKSEINGRLEESTRDSKSMRRKEFEEALKQRKVKESSLEDEALEMESLCAKEKNKRREVEEQLAREKEELQKTKNQQDEIMYELQTVQEQNSALENQLSERQETAKELEEKILSAVDLLISFKEKRDRLQIECANAVRQVRVLREFGKSHTSFSYAVEFPVFSFMEINQATNDFDPSWKIGEGRYGSVYKGVLRNMHVAIKMLPSYGCHSQLEFERQVAVLSRVRHRNLLTLIGTCAESRSLVYEYLNNGSLEGHLARKEKSPLPWQIRISVAADICSALIFLHSSEPSIIHGNLKASKVLLDANFVAKLADIGIHGLVEKNVDSAHTTIHNKPNESLAYVDPEYLATGKFTPESDVYSFGILLLQLLTGRPLLGLVRDVKCALEKDNLEAVLDFSAGEWPLDQTIHLAYLALRCCHKTWLNRPDLTSDIWDVLEPFRTTCMNMPPYLTSKKHRRTPSHFVCPIVQEVMEDPYIAADGFTYEAEAIREWLDSGHDTSPMTNLKLEHTNLVPNYALHNAIQEWQQLQ* 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4427 787 Gene3D HUPs 15 142 IPR014729 -
Amo19g4427 787 PANTHER OS02G0152300 PROTEIN 11 786 - -
Amo19g4427 787 CDD RING-Ubox_WDSUB1_like 721 762 - -
Amo19g4427 787 Gene3D Transferase(Phosphotransferase) domain 1 508 702 - -
Amo19g4427 787 SUPERFAMILY RING/U-box 715 784 - -
Amo19g4427 787 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 32 11 786 - -
Amo19g4427 787 Pfam U-box domain 718 784 IPR003613 GO:0004842|GO:0016567
Amo19g4427 787 CDD STK_N 16 166 - -
Amo19g4427 787 MobiDBLite consensus disorder prediction 53 71 - -
Amo19g4427 787 SUPERFAMILY Protein kinase-like (PK-like) 411 695 IPR011009 -
Amo19g4427 787 Coils Coil 380 400 - -
Amo19g4427 787 Pfam Protein tyrosine and serine/threonine kinase 440 687 IPR001245 GO:0004672|GO:0006468
Amo19g4427 787 ProSiteProfiles Protein kinase domain profile. 435 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g4427 787 MobiDBLite consensus disorder prediction 263 283 - -
Amo19g4427 787 ProSitePatterns Protein kinases ATP-binding region signature. 441 462 IPR017441 GO:0005524
Amo19g4427 787 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 716 787 IPR013083 -
Amo19g4427 787 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 29 129 - -
Amo19g4427 787 Coils Coil 282 372 - -
Amo19g4427 787 MobiDBLite consensus disorder prediction 50 71 - -
Amo19g4427 787 SMART Ubox_2 720 783 IPR003613 GO:0004842|GO:0016567
Amo19g4427 787 ProSiteProfiles U-box domain profile. 716 787 IPR003613 GO:0004842|GO:0016567
Amo19g4427 787 Gene3D Phosphorylase Kinase; domain 1 408 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4427 Amo-Chr19 161326321 161331583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4427 77 784 U-box Gene Family AT3G49060 44.837 0.0 573
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Amo19g4427 PK_Tyr_Ser-Thr 1.5e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4427 - - aprc:113871315 1003.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g4427 19 161326321 161331583 Amo19g4427 19 161326321 161331583 ECH
Amo19g4427 19 161326321 161331583 Amo09g2816 09 107207509 107212940 hybridization