Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4426 ATGCCAGTTGCTAAACTCACGGCCTCTGGCTCTCCTGATGTCATGAAAACAGAAGACAGAAATGATTCTATAGATACCATCATCAGACAAGCAATTGGAAAGGAACCTTTCCTTTCTTTTCCTAGGGCTGGTGACAGCCCTGTACAATGGATTCAATTACTCCATGCTTTAGACCAGCAAGAACTTCCAGGGTGGCCTTTGCTTTCTCCTGTGAAAGTTCAGTTGCAGAAGTGTGACAAGTGTTCTCGAGAGTTTTGCTCTCCCATTAACCATAGAAGACATATGCGTGTACACCATCGATTGAAGAAGCTTGATAAGGATTCTAAGAAAAACCGAGATCTTCTAGGAGCTTATTGGGATAAGCTCTCTATAGAAGAGGCAAAAGAAGTTGTGTCATTCAAGAATGTAATGTTGGAGGAAGTTCCAGGGTCTTCAATTTTAAATGCTTTGGCAAGTCTTACTCAAAAACAAGGATTGTCTTCTCTTCCACAGTATTATCTTAGGGCTGGTTCTGCCCTTCTGGATATTGTCGAATCGAGGCCTTCAAGCTTTCCTATATCTTCCCAAGAGTTGTTCAGTATACTTGATGATTCCAGTGAAAAAACATTTTTGTGTGGGACAGCAGTGTCAATGCAAAGATATGTTTTTGATGGAGAGGCTGGAAAGATTGGTCTTGAACCAAAAAACATAGTTTCTTGCACTAGTTTCTTGGTAGAGCAGAAATTGGTGAAGGCATGGCTTGCAGACAAAGAAGCTGAAGCATTGAAGTGTCAGAAGCAGCTAGTTGAGGAGGAAGAAGCTGCTCAGAAAAGACAAGCTGAGATTTTGGAGAGGAAACGCCAGAAAAAGCTTAGACAAAAAGAACAGAAGGGGAGGGAACTGCTCGAAGATGACATTGAAATTAAACGGAACATCAATAGCACAGGAGAGGCTGTACTATCTGCAGAAACATCTTTGGATACGTGTGTCTTTGAAGCACATAATTCTGATACATTTGCAGATCATGCTTCTTCACCACATGCATCTGCCTGTCACTTTCCTGACATTTATGAAGGTGCTGAAAGGGACTCAGGGTATGAATGTGACACTGATCAAAATATTGAGCGACAAACATCCCACAGACATAATCGTCGACGCATGATGGTTGCAAGACAGCAAGGACTGCCAAAATCACAGTGGGCTGTATCCAACTGTTTACATGCGAGCCCATATTCTCAATTATCAAAGCATGGAGTCATTCAGAGATATGGGACAAACCGGGATCAAAGAGTGACTTCTATTACTAATGGGATGAAAGTSTGGAGTCGAAAGCCTAAACCGGATATTGATGGGATGGTTTCAAAAGCCAGACTGCAAAAAGAACCAGACAAGGTTAAGAATCATGAAGTATTGATAGGATCTATATCTGTAACTCTAAGCAATTGCAGCCAATCAGTGGGTAGCCTTGTGGCATCTCATGGTGATGATATTGTGGAGAATCCGACAAAGCAGTGTACTGTACAGGAGAAGCCAGTGAAACCTGATTCCTCCCAGAGTAGCAACAACCCATTAACAGTGAAGTTTTGGCGGCCAATTGACAAACATGGAACCAAAGACCCATTTCCACTTCAAAATGGTAGGGCTGGAGCTGAAGCTGATACTTATGAAAAACAGGATCAAACTTTGTCAGGTCAAAGTAGTTTAAGGGTGTATAGTATAGATCATAGTGATATTGGTTTCGGGAACAAGTTTCCCGATTTTGGTGCTAAAGCATATCCAAGAAGCCTTTTCTCCAGACATGCTGCCAAAGTCTTTCTTGCACAAAGATGGAAAGAAGCTATTTCATCAAACCATGTGAAATTGGTTGTTTCGCCTGATTCTGAACCGCTTGAATGCCAAGAGGTACAAGATCGTGAACTGACAGCATCTGAATTTTCTAATGCCGATAGATATGGCACTGTTGCAAATGCAGAGAATCAATTGCATGCAACCTCCGAAGTTACTAAATCCAAAACCAAAATGAAGCCTAAAAAGGGAATCAAGATAAAGTATATTCCCAAACAAAAAGCAGCTACCTAG 2058 0.4155 MPVAKLTASGSPDVMKTEDRNDSIDTIIRQAIGKEPFLSFPRAGDSPVQWIQLLHALDQQELPGWPLLSPVKVQLQKCDKCSREFCSPINHRRHMRVHHRLKKLDKDSKKNRDLLGAYWDKLSIEEAKEVVSFKNVMLEEVPGSSILNALASLTQKQGLSSLPQYYLRAGSALLDIVESRPSSFPISSQELFSILDDSSEKTFLCGTAVSMQRYVFDGEAGKIGLEPKNIVSCTSFLVEQKLVKAWLADKEAEALKCQKQLVEEEEAAQKRQAEILERKRQKKLRQKEQKGRELLEDDIEIKRNINSTGEAVLSAETSLDTCVFEAHNSDTFADHASSPHASACHFPDIYEGAERDSGYECDTDQNIERQTSHRHNRRRMMVARQQGLPKSQWAVSNCLHASPYSQLSKHGVIQRYGTNRDQRVTSITNGMKVWSRKPKPDIDGMVSKARLQKEPDKVKNHEVLIGSISVTLSNCSQSVGSLVASHGDDIVENPTKQCTVQEKPVKPDSSQSSNNPLTVKFWRPIDKHGTKDPFPLQNGRAGAEADTYEKQDQTLSGQSSLRVYSIDHSDIGFGNKFPDFGAKAYPRSLFSRHAAKVFLAQRWKEAISSNHVKLVVSPDSEPLECQEVQDRELTASEFSNADRYGTVANAENQLHATSEVTKSKTKMKPKKGIKIKYIPKQKAAT* 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4426 685 ProSitePatterns Zinc finger C2H2 type domain signature. 78 99 IPR013087 -
Amo19g4426 685 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 103 IPR013087 -
Amo19g4426 685 Coils Coil 247 293 - -
Amo19g4426 685 MobiDBLite consensus disorder prediction 528 554 - -
Amo19g4426 685 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 683 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4426 Amo-Chr19 161319470 161324918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4426 18 682 C2H2 Transcription Factor Family AT4G25610 42.815 1.05e-148 443
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo19g4426 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4426 - - gmx:100799153 901.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g4426 19 161319470 161324918 Amo19g4426 19 161319470 161324918 ECH
Amo19g4426 19 161319470 161324918 Amo09g2815 09 107200324 107205782 hybridization
Amo19g4426 19 161319470 161324918 Amo19g4426 19 161319470 161324918 PCT
Amo19g4426 19 161319470 161324918 Amo09g2815 09 107200324 107205782 PCT
Amo09g2815 09 107200324 107205782 Amo19g4426 19 161319470 161324918 PCT