Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4416 ATGAAGCATCATCATCATCTTGTTGTTCTTCTGCTCTTGTTGGTCTGTGGAGTGACCCTATCAGTATCTGAGTCGGAGTCCTATGCTCTTAAGCCTCATATTGCCGAGTCTTTCAATGTCAGCTATCTTCAGCTGAAGAGCCAGGGGAGTTGCTCTTACACGGTGGTTATATCTACTAGTTGTTCTTCTCCTTCTTATACAAGGGATCAGATCAGTATTTCTTTTGGGGATTTTTATGGCAACCAGATATACGTACCGAGATTGGACGATCCGGCTTCAGGTACGTTCGAGCGCTGTTCTTCAGATACCTTTCAGATAAAAGGTCCTTGCGCGTATCAGATATGTTATGTGTACTTATATAGATCCGGCCTAGACGGTTGGATGCCGGAGAGTGTGAAAATCAGTGGTTACTATGGCAAGCCTATTACTTTCTATTACAACACATTCATCCCCAGAGATACATGGATATCGGAGCCATTGAGGGAGAGGCTGAAGGGGAAGGGAATAGAGTCACTGTTTCCAATTCAGGCCATCACCTTTGATACCATTCTTGATGGCTCTGATTTGGTTGGCCGTGCTCGAACCGGTCAGGGAAAAACTCTGGCCTTTGTGTTGCCCATATTAGAGTCTTTGACAAACGGTATAGCCAAAGCTTCAAGAAAGACTGGTTATAGAAGGCCTCCAAGCGTTCTGGTTCTTTTACCAACAAGGGAATTGGCATCTCAGGTTCACTCTGACTTTGAACTTTATGGTGGCGCCGTCGGATTAACATCTTGCTGTTTATATGGTGGAGCTCCATACCAGAGCCAAGAAATTAAGCTCAAGAGAGGTGTTGATATTGTTGTTGGCACACCAGGCCGGATTAAGGATCATATAGAGAGGGAAAATATTGACCTAAGCCAGCTTAGATTTCGCGTCCTGGATGAAGCAGATGAGATGCTGAGGATGGGTTTTGTTGAAGATGTTGAACTTATTCTTGGTAAGGTAGAGAACATTAGTAAAGTCCAGACACTTTTATTCAGTGCTACTTTGCCAGACTGGGTTAAGCATATTGCTGCAAAATTTCTGAAGCCAGATAAGAAGACAGCTGACCTTGTTGGAAATACAAAAATGAAGGCAAGCACCAATGTTAGGCATATTGTTCTTCCGTGCACTACTTCTGCCAGGTCCCGCCTTATTCCGGACATCATTCGCTGTTATAGCAGCGGAGGACGGACGATTATATTTACTGAGACAAAGGAGTCTGCTTCACAACTTGCAGGTTTCTTGCCTGGAGCAAGAGCTCTCCATGGAGACATACAGCAGGCGCAACGTGAGGTTACATTGTCTGGCTTCAGGTCTGGCAAATTCATGACATTAGTTGCTACAAATGTGGCAGCTCGAGGTCTGGATATTAATGATGTTCAATTAATTATCCAGTGTGAACCCCCAAGGGATGTAGAAGCCTATATCCATCGTTCAGGGCGCACGGGACGAGCAGGTAATAGTGGAGTTGCTGTTATGCTTTATGATCCAAGGAGGTCAAGTATATCCAAAATCGAAAGAGAATCCGGTGTCAAATTTGAACATATATCTGCTCCTCAGCCTCATGATATTGCTAAAGCTATAGGTAGGGAAGCTGCTGAGATGATCAATCAAGTGTCTGATAGTGTGATTCCGGCATTCAAGTCTACTGCTGAGGAGCTTTTGAAAAACTCCGGTTTGTCAGTTGTTGAATTACTTGCAAAGGCTCTTGCCAAGGCTGTTGGTTATACTGAGATGAAGAAAAGATCGCTTCTCACTTCCATGGAGAACCATGTTACATTACTTCTTGAGATTGGGAAACCTATCTTCACTGCAACTTTTGCATATGGAGTGTTGAGGAGATTCTTGGCCGAAGAGAAGGTTGAGGCAGTGAAGGGTCTCACTCTCACCGCCGAGGGAAGTGGCGTTGTCTTTGATGTACCAGCTGAAGATTTAGATACATATCTTGCAGGTAAGGACAAGGCCTCAAGTGTGAGGTTAGAGGTGTTGACAGCGTTGCCACGTTTGCAAGAAAAAGACCAATCAAGAGGTGGAAGATTTGGTAGTGGTGGCCCTCGTCGTGGTGGTTTCGGAGATAGAAGTGTTGGGAGCAGGTTTTTGGGTGGAAGAGGTGGCAGTGGCAGGAATGTTAGATTTTCCAGTGACAGATTCTCTAATAATGGTGGCATTGGGAGAGGTCGTGGCATCAGGAGTGGAAAGAGATGGTGA 2232 0.4494 MKHHHHLVVLLLLLVCGVTLSVSESESYALKPHIAESFNVSYLQLKSQGSCSYTVVISTSCSSPSYTRDQISISFGDFYGNQIYVPRLDDPASGTFERCSSDTFQIKGPCAYQICYVYLYRSGLDGWMPESVKISGYYGKPITFYYNTFIPRDTWISEPLRERLKGKGIESLFPIQAITFDTILDGSDLVGRARTGQGKTLAFVLPILESLTNGIAKASRKTGYRRPPSVLVLLPTRELASQVHSDFELYGGAVGLTSCCLYGGAPYQSQEIKLKRGVDIVVGTPGRIKDHIERENIDLSQLRFRVLDEADEMLRMGFVEDVELILGKVENISKVQTLLFSATLPDWVKHIAAKFLKPDKKTADLVGNTKMKASTNVRHIVLPCTTSARSRLIPDIIRCYSSGGRTIIFTETKESASQLAGFLPGARALHGDIQQAQREVTLSGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNSGVAVMLYDPRRSSISKIERESGVKFEHISAPQPHDIAKAIGREAAEMINQVSDSVIPAFKSTAEELLKNSGLSVVELLAKALAKAVGYTEMKKRSLLTSMENHVTLLLEIGKPIFTATFAYGVLRRFLAEEKVEAVKGLTLTAEGSGVVFDVPAEDLDTYLAGKDKASSVRLEVLTALPRLQEKDQSRGGRFGSGGPRRGGFGDRSVGSRFLGGRGGSGRNVRFSSDRFSNNGGIGRGRGIRSGKRW* 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4416 743 Gene3D - 154 377 IPR027417 -
Amo19g4416 743 CDD GUCT_RH7_like 590 675 - -
Amo19g4416 743 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 306 314 IPR000629 -
Amo19g4416 743 Pfam Embryo-specific protein 3, (ATS3) 43 156 IPR010417 -
Amo19g4416 743 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 48 156 IPR036392 GO:0005515
Amo19g4416 743 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 7 158 715 - -
Amo19g4416 743 Pfam DEAD/DEAH box helicase 173 350 IPR011545 GO:0003676|GO:0005524
Amo19g4416 743 Pfam Helicase conserved C-terminal domain 397 494 IPR001650 -
Amo19g4416 743 SUPERFAMILY RNA-binding domain, RBD 587 670 IPR035979 GO:0003676
Amo19g4416 743 Gene3D PLAT/LH2 domain 48 153 - -
Amo19g4416 743 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 180 362 IPR014001 -
Amo19g4416 743 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 158 715 - -
Amo19g4416 743 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 227 506 IPR027417 -
Amo19g4416 743 Gene3D - 378 601 IPR027417 -
Amo19g4416 743 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 392 533 IPR001650 -
Amo19g4416 743 SMART helicmild6 417 494 IPR001650 -
Amo19g4416 743 Pfam GUCT (NUC152) domain 583 678 IPR012562 GO:0003723|GO:0004386|GO:0005524
Amo19g4416 743 CDD PLAT 51 155 - -
Amo19g4416 743 CDD DEADc 160 357 - -
Amo19g4416 743 Gene3D - 602 673 - -
Amo19g4416 743 MobiDBLite consensus disorder prediction 681 743 - -
Amo19g4416 743 CDD SF2_C_DEAD 377 503 - -
Amo19g4416 743 SMART ultradead3 168 380 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4416 Amo-Chr19 161189278 161194237 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4416 143 536 Eukaryotic Initiation Factors Gene Family AT1G72730 29.529 4.40e-40 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4416 K16911 - gmx:100820207 889.412
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g4416 19 161189278 161194237 Amo19g4416 19 161189278 161194237 ECH