Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Amo19g4416 | ATGAAGCATCATCATCATCTTGTTGTTCTTCTGCTCTTGTTGGTCTGTGGAGTGACCCTATCAGTATCTGAGTCGGAGTCCTATGCTCTTAAGCCTCATATTGCCGAGTCTTTCAATGTCAGCTATCTTCAGCTGAAGAGCCAGGGGAGTTGCTCTTACACGGTGGTTATATCTACTAGTTGTTCTTCTCCTTCTTATACAAGGGATCAGATCAGTATTTCTTTTGGGGATTTTTATGGCAACCAGATATACGTACCGAGATTGGACGATCCGGCTTCAGGTACGTTCGAGCGCTGTTCTTCAGATACCTTTCAGATAAAAGGTCCTTGCGCGTATCAGATATGTTATGTGTACTTATATAGATCCGGCCTAGACGGTTGGATGCCGGAGAGTGTGAAAATCAGTGGTTACTATGGCAAGCCTATTACTTTCTATTACAACACATTCATCCCCAGAGATACATGGATATCGGAGCCATTGAGGGAGAGGCTGAAGGGGAAGGGAATAGAGTCACTGTTTCCAATTCAGGCCATCACCTTTGATACCATTCTTGATGGCTCTGATTTGGTTGGCCGTGCTCGAACCGGTCAGGGAAAAACTCTGGCCTTTGTGTTGCCCATATTAGAGTCTTTGACAAACGGTATAGCCAAAGCTTCAAGAAAGACTGGTTATAGAAGGCCTCCAAGCGTTCTGGTTCTTTTACCAACAAGGGAATTGGCATCTCAGGTTCACTCTGACTTTGAACTTTATGGTGGCGCCGTCGGATTAACATCTTGCTGTTTATATGGTGGAGCTCCATACCAGAGCCAAGAAATTAAGCTCAAGAGAGGTGTTGATATTGTTGTTGGCACACCAGGCCGGATTAAGGATCATATAGAGAGGGAAAATATTGACCTAAGCCAGCTTAGATTTCGCGTCCTGGATGAAGCAGATGAGATGCTGAGGATGGGTTTTGTTGAAGATGTTGAACTTATTCTTGGTAAGGTAGAGAACATTAGTAAAGTCCAGACACTTTTATTCAGTGCTACTTTGCCAGACTGGGTTAAGCATATTGCTGCAAAATTTCTGAAGCCAGATAAGAAGACAGCTGACCTTGTTGGAAATACAAAAATGAAGGCAAGCACCAATGTTAGGCATATTGTTCTTCCGTGCACTACTTCTGCCAGGTCCCGCCTTATTCCGGACATCATTCGCTGTTATAGCAGCGGAGGACGGACGATTATATTTACTGAGACAAAGGAGTCTGCTTCACAACTTGCAGGTTTCTTGCCTGGAGCAAGAGCTCTCCATGGAGACATACAGCAGGCGCAACGTGAGGTTACATTGTCTGGCTTCAGGTCTGGCAAATTCATGACATTAGTTGCTACAAATGTGGCAGCTCGAGGTCTGGATATTAATGATGTTCAATTAATTATCCAGTGTGAACCCCCAAGGGATGTAGAAGCCTATATCCATCGTTCAGGGCGCACGGGACGAGCAGGTAATAGTGGAGTTGCTGTTATGCTTTATGATCCAAGGAGGTCAAGTATATCCAAAATCGAAAGAGAATCCGGTGTCAAATTTGAACATATATCTGCTCCTCAGCCTCATGATATTGCTAAAGCTATAGGTAGGGAAGCTGCTGAGATGATCAATCAAGTGTCTGATAGTGTGATTCCGGCATTCAAGTCTACTGCTGAGGAGCTTTTGAAAAACTCCGGTTTGTCAGTTGTTGAATTACTTGCAAAGGCTCTTGCCAAGGCTGTTGGTTATACTGAGATGAAGAAAAGATCGCTTCTCACTTCCATGGAGAACCATGTTACATTACTTCTTGAGATTGGGAAACCTATCTTCACTGCAACTTTTGCATATGGAGTGTTGAGGAGATTCTTGGCCGAAGAGAAGGTTGAGGCAGTGAAGGGTCTCACTCTCACCGCCGAGGGAAGTGGCGTTGTCTTTGATGTACCAGCTGAAGATTTAGATACATATCTTGCAGGTAAGGACAAGGCCTCAAGTGTGAGGTTAGAGGTGTTGACAGCGTTGCCACGTTTGCAAGAAAAAGACCAATCAAGAGGTGGAAGATTTGGTAGTGGTGGCCCTCGTCGTGGTGGTTTCGGAGATAGAAGTGTTGGGAGCAGGTTTTTGGGTGGAAGAGGTGGCAGTGGCAGGAATGTTAGATTTTCCAGTGACAGATTCTCTAATAATGGTGGCATTGGGAGAGGTCGTGGCATCAGGAGTGGAAAGAGATGGTGA | 2232 | 0.4494 | MKHHHHLVVLLLLLVCGVTLSVSESESYALKPHIAESFNVSYLQLKSQGSCSYTVVISTSCSSPSYTRDQISISFGDFYGNQIYVPRLDDPASGTFERCSSDTFQIKGPCAYQICYVYLYRSGLDGWMPESVKISGYYGKPITFYYNTFIPRDTWISEPLRERLKGKGIESLFPIQAITFDTILDGSDLVGRARTGQGKTLAFVLPILESLTNGIAKASRKTGYRRPPSVLVLLPTRELASQVHSDFELYGGAVGLTSCCLYGGAPYQSQEIKLKRGVDIVVGTPGRIKDHIERENIDLSQLRFRVLDEADEMLRMGFVEDVELILGKVENISKVQTLLFSATLPDWVKHIAAKFLKPDKKTADLVGNTKMKASTNVRHIVLPCTTSARSRLIPDIIRCYSSGGRTIIFTETKESASQLAGFLPGARALHGDIQQAQREVTLSGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNSGVAVMLYDPRRSSISKIERESGVKFEHISAPQPHDIAKAIGREAAEMINQVSDSVIPAFKSTAEELLKNSGLSVVELLAKALAKAVGYTEMKKRSLLTSMENHVTLLLEIGKPIFTATFAYGVLRRFLAEEKVEAVKGLTLTAEGSGVVFDVPAEDLDTYLAGKDKASSVRLEVLTALPRLQEKDQSRGGRFGSGGPRRGGFGDRSVGSRFLGGRGGSGRNVRFSSDRFSNNGGIGRGRGIRSGKRW* | 744 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Amo19g4416 | 743 | Gene3D | - | 154 | 377 | IPR027417 | - | |
Amo19g4416 | 743 | CDD | GUCT_RH7_like | 590 | 675 | - | - | |
Amo19g4416 | 743 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 306 | 314 | IPR000629 | - | |
Amo19g4416 | 743 | Pfam | Embryo-specific protein 3, (ATS3) | 43 | 156 | IPR010417 | - | |
Amo19g4416 | 743 | SUPERFAMILY | Lipase/lipooxygenase domain (PLAT/LH2 domain) | 48 | 156 | IPR036392 | GO:0005515 | |
Amo19g4416 | 743 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE 7 | 158 | 715 | - | - | |
Amo19g4416 | 743 | Pfam | DEAD/DEAH box helicase | 173 | 350 | IPR011545 | GO:0003676|GO:0005524 | |
Amo19g4416 | 743 | Pfam | Helicase conserved C-terminal domain | 397 | 494 | IPR001650 | - | |
Amo19g4416 | 743 | SUPERFAMILY | RNA-binding domain, RBD | 587 | 670 | IPR035979 | GO:0003676 | |
Amo19g4416 | 743 | Gene3D | PLAT/LH2 domain | 48 | 153 | - | - | |
Amo19g4416 | 743 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 180 | 362 | IPR014001 | - | |
Amo19g4416 | 743 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 158 | 715 | - | - | |
Amo19g4416 | 743 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 227 | 506 | IPR027417 | - | |
Amo19g4416 | 743 | Gene3D | - | 378 | 601 | IPR027417 | - | |
Amo19g4416 | 743 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 392 | 533 | IPR001650 | - | |
Amo19g4416 | 743 | SMART | helicmild6 | 417 | 494 | IPR001650 | - | |
Amo19g4416 | 743 | Pfam | GUCT (NUC152) domain | 583 | 678 | IPR012562 | GO:0003723|GO:0004386|GO:0005524 | |
Amo19g4416 | 743 | CDD | PLAT | 51 | 155 | - | - | |
Amo19g4416 | 743 | CDD | DEADc | 160 | 357 | - | - | |
Amo19g4416 | 743 | Gene3D | - | 602 | 673 | - | - | |
Amo19g4416 | 743 | MobiDBLite | consensus disorder prediction | 681 | 743 | - | - | |
Amo19g4416 | 743 | CDD | SF2_C_DEAD | 377 | 503 | - | - | |
Amo19g4416 | 743 | SMART | ultradead3 | 168 | 380 | IPR014001 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Amo19g4416 | Amo-Chr19 | 161189278 | 161194237 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Amo19g4416 | 143 | 536 | Eukaryotic Initiation Factors Gene Family | AT1G72730 | 29.529 | 4.40e-40 | 150 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Amo19g4416 | K16911 | - | gmx:100820207 | 889.412 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Amo19g4416 | 19 | 161189278 | 161194237 | Amo19g4416 | 19 | 161189278 | 161194237 | ECH |