Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4409 ATGCCAGTGAGGCAGATGAAAGAAAGCTCTGAGCAACACATTGTGATTAAACCCCATTCTCAGAACCACATGAATAAGGCACCAAAAGCTGCACAAAATGGAAAAGGACCACCACCACCACCACCATCACAAGAGAACCACCAGCACCACAACAACAACCACCACCACCACCACAACCACCAGTCATCACCTCAACCAAGAAACAAAGGGAGAAGAAGGGGCAGAGGTGGGAGAAAATCTGATCAAGGAGAGATTTTGATGAGACCAAGTTGCAGGCCCTGCACTGCTGGTGCTGCTCCTCCTCCTGTGACAGCAAATGGGATTAATAGTAATAATGTTGAGAATGGCTGCAAGATCAGTGGTGGTGGTGGTGACATAACAGACATGGGTTTTCCCACTTCAAGCAAATCCTTGAGCTTTGCTCGCAGGCCTGGCTATGGACAAGTTGGGACAAAATGCATTGTCAAGGCTAATCACTTCTTTGCTGAGCTACCGGACAAGGACTTGAACCAATATGATGTAACAATTAGCCCAGAAGTGAGTTCAAGAGCAGTAAATCGGTCCATAATAGCAGAACTTGTGAGGCTTTACAAAGAGTCTGATTTGGGGATGAGGCTTCCTGCTTATGATGGCAGGAAAAGTCTGTACACTGCTGGCCAGCTTCCCTTTGCCTGGAGAGAATTTAAGATAAAGCTTCTTGATGATAATGATGATGGAGTTAATGGCCCCAAAAGGGAAAGGGAATATAGGGTGGTGATCAAGTTTGTTGCTCGTGCAAACTTGCATCACTTGGGCCAGTTTCTAGCCGGCAAGCGAGCTGATGCACCACAGGAGGCACTTCAGATTCTTGATATTGTACTGAGAGAGCTATCAACTAAGAGGTACTGCCCCATTGGGAGGTCCTTCTTTTCACCTGATATTAGAACACCTCAACGGCTTGGAGAGGGGTTGGAATCATGGTGTGGATTCTACCAGAGCATAAGGCCTACTCAGATGGGCCTTTCCCTCAATATTGACATGGCTTCTGCTGCATTCATTGAGCCTCTTCCAGTAGTAGAATTTGTTGGCCAACTATTAGGGAAAGATGTTCTTTCAAGGCCACTGTTCCCTGTTGATGAGAACTCAACTATGAAGTCAGTGGTTGAATACTTTCAAGAGATGTATGGTTTCACTATTCAATACACTCACCTTCCTTGCCTTCAAGTAGGAAACCAAAAGAAGGCAAACTACTTACCCATGGAGGCCTGTAAAATTGTGGAGGGGCAAAGGTATACAAAAAGATTGAATGAGAAGCAAATTACTGCACTGCTCAAAGTTACTTGCCAGAGACCGCGCGATCGCGAAAATGACATCTTAAGGACGGTGCAACATAATTCTTATAATGAAGATCCTTATGCAAAGGAATTTGGTCTTAAAATCAGTGAAAAGCTAGCTTCTGTTGAAGCACGAATTCTTCCTGCCCCTTGGCTTAAATACCATGAAAGTGGGAAAGAAAAGAACTGTTTACCCCAAGTTGGTCAGTGGAACATGATGAACAAGAAAATGATTAATGGAATGACTGTTAGCCGGTGGGCGTGCATTAACTTTTCGCGGAGCGTGCAAGATAGTGTTGCTCGCACATTTTGTCATGAGCTTGCTCAAATGTGTCAAGTGTCTGGCATGGAATTCAATCCAGAGCCTGTCATTCCCATCTACAATGCCAAGCCAGAGCAGGTAGAGAAAGCTTTAAAGCATGTTTATCATGTGTCGACGAACAAAACTAAAGGGAAAGAGTTGGAGCTTTTGTTAGCAATATTGCCTGACAACAATGGATCTCTATATGGTGATCTCAAGCGTATTTGTGAAACTGACCTTGGTTTAATTTCACAATGCTGTCTGACAAAACATGTCTTCAAGATCACCAAACAGTACTTGGCAAATGTATCTCTAAAGATCAATGTTAAGATGGGAGGTAGAAACACTGTTCTTCTAGATGCTGTAAGCTGCAGAATACCGTTGGTTAGTGACATACCAACCATAATATTCGGAGCAGATGTTACTCACCCTGAAAATGGAGAAGACTCTAGCCCTTCAATAGCTGCTGTAGTAGCATCCCAGGACTGGCCTGAAGTGACAAAATATGCTGGTTTAGTGTGTGCTCAAGCTCATAGACAGGAGCTTATACAAGATTTGTACAAAACTTGGCACGATCCTGTTCGTGGCACAGTCAGCGGTGGCATGATCCGAGATTTGTTGGTTTCTTTTAGAAAGGCAACAGGGCAAAAGCCACTAAGGATTATATTTTACAGGGATGGTGTAAGTGAAGGACAATTTTACCAAGTTCTCCTTTATGAATTAGATGCAATCCGGAAGGCATGTGCTTCCTTAGAACCAAACTATCAGCCTCCGGTAACTTTCATAGTTGTACAAAAACGACATCATACACGGTTATTCGCTAACAACCACCGGGACAGGAGCAGTACAGATAAGAGTGGGAATATAATGCCTGGGACTGTTGTTGATTCTAAAATATGCCATCCAACAGAATTTGATTTCTATCTATGCAGTCATGCTGGCATTCAGGGTACAAGTAGGCCTGCCCATTATCATGTTCTGTGGGATGAAAACAACTTCACAGCAGATGGAATTCAATCTTTGACAAACAATCTGTGTTACACATATGCTAGATGTACTCGATCTGTATCAGTTGTTCCTCCAGCATATTATGCACATTTAGCAGCATTTAGAGCACGTTTCTATATGGAGCCAGATATGCAAGAGAATGACTCTACAGGTGGTGGTAACAGTGGCGGTCGTGGAGGGTCGAAGGGAACTCGAGCAACCGGAGAGTGTGGTGTGAAGCCACTGCCAGCCTTGAAAGAGAATGTGAAGAGAGTAATGTTTTACTGTTGA 2892 0.4381 MPVRQMKESSEQHIVIKPHSQNHMNKAPKAAQNGKGPPPPPPSQENHQHHNNNHHHHHNHQSSPQPRNKGRRRGRGGRKSDQGEILMRPSCRPCTAGAAPPPVTANGINSNNVENGCKISGGGGDITDMGFPTSSKSLSFARRPGYGQVGTKCIVKANHFFAELPDKDLNQYDVTISPEVSSRAVNRSIIAELVRLYKESDLGMRLPAYDGRKSLYTAGQLPFAWREFKIKLLDDNDDGVNGPKREREYRVVIKFVARANLHHLGQFLAGKRADAPQEALQILDIVLRELSTKRYCPIGRSFFSPDIRTPQRLGEGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVVEFVGQLLGKDVLSRPLFPVDENSTMKSVVEYFQEMYGFTIQYTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNEKQITALLKVTCQRPRDRENDILRTVQHNSYNEDPYAKEFGLKISEKLASVEARILPAPWLKYHESGKEKNCLPQVGQWNMMNKKMINGMTVSRWACINFSRSVQDSVARTFCHELAQMCQVSGMEFNPEPVIPIYNAKPEQVEKALKHVYHVSTNKTKGKELELLLAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKITKQYLANVSLKINVKMGGRNTVLLDAVSCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRDLLVSFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLFANNHRDRSSTDKSGNIMPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPDMQENDSTGGGNSGGRGGSKGTRATGECGVKPLPALKENVKRVMFYC* 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4409 963 SUPERFAMILY Ribonuclease H-like 586 916 IPR012337 -
Amo19g4409 963 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 368 962 - -
Amo19g4409 963 MobiDBLite consensus disorder prediction 919 941 - -
Amo19g4409 963 Gene3D - 484 657 - -
Amo19g4409 963 Pfam Argonaute linker 2 domain 446 492 IPR032472 -
Amo19g4409 963 Pfam N-terminal domain of argonaute 152 287 IPR032474 -
Amo19g4409 963 Pfam Piwi domain 595 914 IPR003165 GO:0003676
Amo19g4409 963 CDD PAZ_argonaute_like 365 419 - -
Amo19g4409 963 Gene3D - 663 963 IPR036397 GO:0003676
Amo19g4409 963 ProSiteProfiles PAZ domain profile. 369 420 IPR003100 GO:0005515
Amo19g4409 963 PANTHER PROTEIN ARGONAUTE 10 368 962 - -
Amo19g4409 963 PANTHER PROTEIN ARGONAUTE 10 68 368 - -
Amo19g4409 963 SMART DUF1785_2 296 348 IPR014811 -
Amo19g4409 963 MobiDBLite consensus disorder prediction 50 76 - -
Amo19g4409 963 SMART Piwi_a_2 594 915 IPR003165 GO:0003676
Amo19g4409 963 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 68 368 - -
Amo19g4409 963 ProSiteProfiles Piwi domain profile. 594 915 IPR003165 GO:0003676
Amo19g4409 963 Pfam Mid domain of argonaute 503 580 IPR032473 -
Amo19g4409 963 MobiDBLite consensus disorder prediction 921 935 - -
Amo19g4409 963 CDD Piwi_ago-like 464 914 IPR045246 -
Amo19g4409 963 Pfam PAZ domain 369 436 IPR003100 GO:0005515
Amo19g4409 963 Pfam Argonaute linker 1 domain 297 346 IPR014811 -
Amo19g4409 963 MobiDBLite consensus disorder prediction 1 98 - -
Amo19g4409 963 SUPERFAMILY PAZ domain 154 461 IPR036085 GO:0005515
Amo19g4409 963 Gene3D paz domain 355 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4409 Amo-Chr19 161112732 161118221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4409 1 963 Eukaryotic Initiation Factors Gene Family AT5G43810 77.120 0.0 1558
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4409 K11593 - gmx:100816999 1675.22