Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4394 ATGAATAATCCTGATGATCATGGTGTTGGTAGAGTAATGAAGGAGGAGTATCTAGGAGAAGGGTCTTGTTCCTTTTCATATCCAATGGTGGTGGATGTTCCTCCTCCTCCTCCGCCACCGCCGCCGCATCCAATGGAGGGGCTTAATGAGAGTGGTCCTCCGCCGTTCCTGACAAAGACATATGACATCGTTGAAGACCCTTCAACAAATCACATAGTTTCTTGGAGCAAAGGAAACAACAGCTTCGTTGTGTGGGATCCTCAAGCTTTCTCCATTACCCTTCTCCCAAGATTCTTCAAGCACAACAATTTCTCCAGCTTTGTCCGCCAACTCAACACCTATGGTTTTAAAAAGGTAGATCCAGATAGGTGGGAATTTGCTAATGAGATGTTTCTTAGAGGGCAAAGAGTACTTTTGAAGAACATCAAAAGGAGGAAGACAAATCAAACTCATCATCATCACCAGCAAGGTTTAGACCCTTGTGTTGAAGTTGGAAGGTTTGGTGGATTAGATGGAGAACTCAACCGGTTGCGGCGTGACCGGCAGGTACTAATGGCGGAGCTGGTGAAGCTCAGACAACAGCAGCAGGCTACAAAGTCTCAAATTCAAGCCATGGAAGTTAAGCTTCGAAAGACGGAGCAGAAACAGCAGCAGATGATGACCTTCATGGCAAGGGCAATGCAGAATCCAAACTTTGTGCAGCAATTGGTTCAACAAAAGGATTGGAGAAAGGAATTGGAGGAAGCTTTCTCTAATAAGAGGATGAGACCTATTCATCAAGGACCTAGTAACAATCATGATGGATTATTAGGTTATGTTGATGAAGATTGCTCAACTTTTATTAAACTAGAATCACACATTGATGATGATGATGATGATGATAATGATGACAAGTTTGATTTTGAGGTATCAGAGATGGACCTTCTTGGTTTGAATGTTAAGGGACAAAGTAGCAGTGAATATCATCATAATAATAATCATGTTCAAGTTGGAGTAAGTAGAAATAATAATAATAATAATAATAATAATAATAATAATAATATTGATGAAGTGTTTTGGGAAGATTTGTTGAATGAAGGTTTTGAAGATGAAGATGTTCTTGCAGCTGCTGAAGATGTAGATGTCTTGGCTGAACAACTTGGTTATTTAGCTTCTAGTCCTCATAAATAA 1170 0.4026 MNNPDDHGVGRVMKEEYLGEGSCSFSYPMVVDVPPPPPPPPPHPMEGLNESGPPPFLTKTYDIVEDPSTNHIVSWSKGNNSFVVWDPQAFSITLLPRFFKHNNFSSFVRQLNTYGFKKVDPDRWEFANEMFLRGQRVLLKNIKRRKTNQTHHHHQQGLDPCVEVGRFGGLDGELNRLRRDRQVLMAELVKLRQQQQATKSQIQAMEVKLRKTEQKQQQMMTFMARAMQNPNFVQQLVQQKDWRKELEEAFSNKRMRPIHQGPSNNHDGLLGYVDEDCSTFIKLESHIDDDDDDDNDDKFDFEVSEMDLLGLNVKGQSSSEYHHNNNHVQVGVSRNNNNNNNNNNNNNIDEVFWEDLLNEGFEDEDVLAAAEDVDVLAEQLGYLASSPHK* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4394 389 ProSitePatterns HSF-type DNA-binding domain signature. 95 119 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo19g4394 389 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 40 371 IPR027725 -
Amo19g4394 389 PRINTS Heat shock factor (HSF) domain signature 56 79 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo19g4394 389 PRINTS Heat shock factor (HSF) domain signature 107 119 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo19g4394 389 PRINTS Heat shock factor (HSF) domain signature 94 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo19g4394 389 Pfam HSF-type DNA-binding 56 145 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo19g4394 389 Gene3D - 49 147 IPR036388 -
Amo19g4394 389 SUPERFAMILY "Winged helix" DNA-binding domain 51 145 IPR036390 -
Amo19g4394 389 Coils Coil 174 215 - -
Amo19g4394 389 SMART hsfneu3 52 145 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo19g4394 389 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 40 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4394 Amo-Chr19 160990647 160992609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4394 36 388 HSF AT3G22830 55.795 1.96e-128 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Amo19g4394 HSF_DNA-bind 5.2e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4394 K09419 - gmx:100809515 424.091