Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4387 ATGGCTGGTAGGCTACCTGGTGTTGGAGTGCCCCCTAGAAAGAGATCTTCTTCTTCATCATCATCTTCTTCTTCTTTGTTAGAGCACAACCACTACAATCTTGCCACCTACCGAAGAGTATCATTAGTGGAGGCAAGTGCCTTGGATGAAACTGCTCTTAAGGCCAGACAAAGGCTTCAGAAGAAGCTTGCACAATTCTTTCCTTCTTCCAGGGAAAATGAGAATCCAATAAGAGAAGGAAAAGTGAAGAAAGAAAAGAGAGATGAAGGAATAATAATAGGAAGGAAGCTATTATCAAATGCATGGTTAATGCGTGCTAAGAAGAACGAGAGAAAAGTGTGTGCAGTGTGCCTAGAAGATTTCCAGCAAGAGAAGCAGATTATGAACCTTTCTTGCTCTCACAAGTTTCACTCTGCATGCCTTCTCCCATGGCTTCAATCCCATCCTCACTGTCCTTATTGTCGAACCCCAGTTGATGCACACACATATACTCCTTAA 498 0.4277 MAGRLPGVGVPPRKRSSSSSSSSSSLLEHNHYNLATYRRVSLVEASALDETALKARQRLQKKLAQFFPSSRENENPIREGKVKKEKRDEGIIIGRKLLSNAWLMRAKKNERKVCAVCLEDFQQEKQIMNLSCSHKFHSACLLPWLQSHPHCPYCRTPVDAHTYTP* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4387 165 ProSiteProfiles Zinc finger RING-type profile. 114 155 IPR001841 -
Amo19g4387 165 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 17 157 - -
Amo19g4387 165 MobiDBLite consensus disorder prediction 13 27 - -
Amo19g4387 165 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 163 IPR013083 -
Amo19g4387 165 SMART ring_2 114 154 IPR001841 -
Amo19g4387 165 MobiDBLite consensus disorder prediction 1 27 - -
Amo19g4387 165 Pfam Ring finger domain 113 155 IPR001841 -
Amo19g4387 165 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 17 157 - -
Amo19g4387 165 SUPERFAMILY RING/U-box 113 161 - -
Amo19g4387 165 MobiDBLite consensus disorder prediction 64 84 - -
Amo19g4387 165 CDD RING-H2_PA-TM-RING 113 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4387 Amo-Chr19 160905557 160907790 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4387 106 155 C3H Transcription Factor Family AT3G58720 42.000 8.57e-12 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4387 - - gmx:100527548 180.644