Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4385 ATGGGGAAGGCAGGGAAATGGCTTAGAAACTTCTTGACAGGGAAGAAAGAAAGGGAAAAGGAGAAGGTGAAGGACAAATGTGGTGGTAATGCAACAAGCCTGAATTCTTCAAATGGAACAGAAAATCCAACCACTCCAAATTCCACAACCCCAAAGGAGAAAAGGAGATGGAGCTTTAGAAGATCATCTGCCACATCCACATCCACACCAACAACACCTTCCAAGGAATTGAACTTTGCAGAATCAAATGTCACTGCTTCACAGACACCACAAGCTGCTGCCACCACAGATATTCCTCTGGATGACGAGCAGAAGAAGCATGCCATGGCTGTGGCTGCTGCCACGGAGGCAGCAGCTGATGCGGCAGTGGCTGCAGCTCAGGCTGCGGCTGCTGTGATCCGCTTGGCTTCTGGTTCCAATGGAACAGCTGAAGAGGCTGCAGCCATCAAAATTCAATCTGTCTTTAGGTCCTACTTGGCAAGAAAAGCATTGTGTGCTCTCAGAGGACTAGTGAAGTTGCAGGCACTGGTAAGGGGTCACTTGGTGAGAAAACAGGCCAAGGCAACACTGAGATGCATGCAGGCTTTGGTGACAGCACAGGCTAGAGCTCGTGCTCAGAGGATCCGAATTGCATCATCAGAAGGGAAGTCTTATCAGAAGCAATCAAGTTTCAGAAACACTACAGAGGAAGATTTATATGCTCAAGTGTATAATGAAATGGAGAGAGGCCTAGAAGAGAACATCAAGATTGTGGAGATGGATGTCTGTGAATCAAAAGGAAACTCTAGAAGCAGAAGCAGCAGTGTGCATAAATTTCCAGCATATTATTCAAAGGAAGAAAACTTGAAGGTATCACCAGCTCCATCAGCCTTAACAGAGTTTAGTCCAAGAGCATGTAGTGGACACTTTGAGGACTGCTTCAGCACAGCACAGAGCAGCCCTCAATGCTACTCGGCCGCATCTGGAGCTGACGATTCGAAGCATCCCTTCTCCTTCCCTAGGCCAGGGTATGGTGAGGTGATGTCCTATGACTACCCTTTGTTTCCAAATTACATGGCCAACACAGAATCATCAAGGGCCAAAGTGAGATCACACAGTGCACCAAAGCAAAGGCCTGATTCATTTGAGAGGCAGCTGAGCCGGCGAAGAGCTTCTGTGGAAGGAAGGAATGTGCCAAGGCCTGTGAGGATGCAGAGGTCATCTTCACATGTAGGTGCCACTAATCCATGGTCAGCAATCAAGCTTGATAGGTCCTCAGTTTCACTCAAGGACAGTGAGTGTGGATCAACAAGTACAGTCCTCACAAACACTAATTACTGCAGAACCCTTGTTGCATATCATGTAAGTACTACCTCTTTGAAATTAAATTAG 1371 0.4712 MGKAGKWLRNFLTGKKEREKEKVKDKCGGNATSLNSSNGTENPTTPNSTTPKEKRRWSFRRSSATSTSTPTTPSKELNFAESNVTASQTPQAAATTDIPLDDEQKKHAMAVAAATEAAADAAVAAAQAAAAVIRLASGSNGTAEEAAAIKIQSVFRSYLARKALCALRGLVKLQALVRGHLVRKQAKATLRCMQALVTAQARARAQRIRIASSEGKSYQKQSSFRNTTEEDLYAQVYNEMERGLEENIKIVEMDVCESKGNSRSRSSSVHKFPAYYSKEENLKVSPAPSALTEFSPRACSGHFEDCFSTAQSSPQCYSAASGADDSKHPFSFPRPGYGEVMSYDYPLFPNYMANTESSRAKVRSHSAPKQRPDSFERQLSRRRASVEGRNVPRPVRMQRSSSHVGATNPWSAIKLDRSSVSLKDSECGSTSTVLTNTNYCRTLVAYHVSTTSLKLN* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4385 456 MobiDBLite consensus disorder prediction 61 95 - -
Amo19g4385 456 SMART iq_5 166 187 IPR000048 GO:0005515
Amo19g4385 456 SMART iq_5 143 165 IPR000048 GO:0005515
Amo19g4385 456 MobiDBLite consensus disorder prediction 10 27 - -
Amo19g4385 456 MobiDBLite consensus disorder prediction 359 406 - -
Amo19g4385 456 Gene3D - 143 195 - -
Amo19g4385 456 Pfam Protein of unknown function (DUF4005) 313 388 IPR025064 -
Amo19g4385 456 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 430 - -
Amo19g4385 456 ProSiteProfiles IQ motif profile. 144 172 IPR000048 GO:0005515
Amo19g4385 456 MobiDBLite consensus disorder prediction 29 52 - -
Amo19g4385 456 Pfam IQ calmodulin-binding motif 146 164 IPR000048 GO:0005515
Amo19g4385 456 Pfam IQ calmodulin-binding motif 171 187 IPR000048 GO:0005515
Amo19g4385 456 ProSiteProfiles IQ motif profile. 168 195 IPR000048 GO:0005515
Amo19g4385 456 MobiDBLite consensus disorder prediction 362 389 - -
Amo19g4385 456 MobiDBLite consensus disorder prediction 1 98 - -
Amo19g4385 456 PANTHER IQ-DOMAIN 5-RELATED 1 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4385 Amo-Chr19 160892348 160894275 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4385 1 441 IQD Protein Family AT4G14750 47.134 3.35e-109 329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4385 - - gmx:100817667 531.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g4385 19 160892348 160894275 Amo19g4385 19 160892348 160894275 ECH