Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4380 ATGATTCATAGAGCAGCATCAACACCAACGCTTCAAGCTTTGATTGAGGTGTCCAAGATGCATTCGGAAAGTGGGGATGTTGGGACACCAAAAGGGGCATTGGAAGAAGCTAAGGCGTTGAATTCAAAGATGAAGCGTAGTGGGAACCTAAGCAGCAAAGATATGCTGTTTAGAGCTGATAAGATTGATCTCAAGAGTTTGGATGATGAGCTAGAAAAACACCTGACAAGGGTTCTGTCTAGACATATTGAGGCCAAAAGGCCTAAAGAAGAGTGGGAGATTGATTTGGCAAAACTAAATTTGCAACATGTTGTGGCGAATGGGGCCTATGGCACTGTCTATAAGGGCACCTATGATGGCCAAGATGTTGCAGTGAAAGTGTTGGACTGGGGTGAGGATGGTGGTGCTTCTGCTGCTTCCTTAAGAGCATCATTCCAGCAGGAGGTTACTGTTTGGCAAAAACTTGATCATCCAAATGTTACAAAATTTGTTGGAGCTTCAATGGGGACATCAAACCTCAGAATCCCAAGAGAAGCCGGAGGCCAAGATTCTCTCCCTACTCAAGCATGTTGCGTGGTTGTTGAGTTCATCCCCGGTGGAACTCTGAAAAATTACTTGTTTAAGAACAGACGGAGGAAACTTCCTTACAAGACTGTGATTCAGCTGGCTTTGGATCTCGCTCGAGGTCTTAGTTATCTACATTCGAAAAAGATCGTGCATCGTGATGTTAAAACAGATAATATGTTGCTCGATATGAATCGAAATTTGAAAATAGCTGATTTTGGAGTTGCTCGTGTGGAAGCTTTGAATCCAAGTGAGATGACAGGTGAAACAGGAACCATTGGATATATGGCACCAGAGGTTTTAGTAGGCAAGCCTTACAATAGAAGATGTGATGTGTATAGCTTTGGCATTTGCTTGTGGGAAATATACTGTTGTGATATGCCATATTCGACACGAAGCTTTGTTGATGTCTCGTCGGCAGTTACTCATCAGAATTTGCGACCGGATATTCCTCGATGCTGCCCGAGTGCATTGGCGAACATCATGCGAAAATGCTGGGATGGGAACCCAAACAAGCGGCCGGAGATGGATCAGGTGGTGCGAATGTTGGAAGCAATTGATACCAGCAAAGGAGGAGGGATGCTGCCTGATGATCAGGCTCCATTTTGTTTCTGTTTTGGAACAGTTCGTGGTCCTTAG 1203 0.4456 MIHRAASTPTLQALIEVSKMHSESGDVGTPKGALEEAKALNSKMKRSGNLSSKDMLFRADKIDLKSLDDELEKHLTRVLSRHIEAKRPKEEWEIDLAKLNLQHVVANGAYGTVYKGTYDGQDVAVKVLDWGEDGGASAASLRASFQQEVTVWQKLDHPNVTKFVGASMGTSNLRIPREAGGQDSLPTQACCVVVEFIPGGTLKNYLFKNRRRKLPYKTVIQLALDLARGLSYLHSKKIVHRDVKTDNMLLDMNRNLKIADFGVARVEALNPSEMTGETGTIGYMAPEVLVGKPYNRRCDVYSFGICLWEIYCCDMPYSTRSFVDVSSAVTHQNLRPDIPRCCPSALANIMRKCWDGNPNKRPEMDQVVRMLEAIDTSKGGGMLPDDQAPFCFCFGTVRGP* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4380 400 Gene3D Transferase(Phosphotransferase) domain 1 199 381 - -
Amo19g4380 400 CDD STKc_MAP3K-like 108 371 - -
Amo19g4380 400 PANTHER KINASE ATMRK1, PUTATIVE-RELATED 39 393 - -
Amo19g4380 400 Gene3D Phosphorylase Kinase; domain 1 88 179 - -
Amo19g4380 400 ProSiteProfiles Protein kinase domain profile. 99 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g4380 400 SUPERFAMILY Protein kinase-like (PK-like) 85 371 IPR011009 -
Amo19g4380 400 SMART serkin_6 99 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g4380 400 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 39 393 - -
Amo19g4380 400 PRINTS Tyrosine kinase catalytic domain signature 194 207 IPR001245 GO:0004672|GO:0006468
Amo19g4380 400 PRINTS Tyrosine kinase catalytic domain signature 232 250 IPR001245 GO:0004672|GO:0006468
Amo19g4380 400 PRINTS Tyrosine kinase catalytic domain signature 298 320 IPR001245 GO:0004672|GO:0006468
Amo19g4380 400 PRINTS Tyrosine kinase catalytic domain signature 342 364 IPR001245 GO:0004672|GO:0006468
Amo19g4380 400 Pfam Protein tyrosine and serine/threonine kinase 99 371 IPR001245 GO:0004672|GO:0006468
Amo19g4380 400 ProSitePatterns Serine/Threonine protein kinases active-site signature. 238 250 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4380 Amo-Chr19 160825564 160827853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4380 48 400 MAP Kinase Kinase Kinase AT3G22750 75.350 0.0 580
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Amo19g4380 PK_Tyr_Ser-Thr 3.1e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4380 - - gmx:100803917 623.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g4380 19 160825564 160827853 Amo19g4380 19 160825564 160827853 ECH
Amo19g4380 19 160825564 160827853 Amo05g2196 05 47496229 47499923 PCT