Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4378 ATGTTCTCTTCCACATATGATTCAAACCCTTTCCCTAACTTCCCTTCATCTTCTTCTTCTTCATCTTATCCTAATAATAATAATAATAATAATACACTCCCTTTCTACATTGATCCACATAACAACAATGATTTTGCAACCACGCTTCTTCACCATCATGATCCATCATCACTACTTGTTTCTCCCTTTATACCTTCAAGTGAAGTGCCATTCCCGTCATCAGCAGAAGAAGCTGTTGTTGTTGCAGCAATGCTTGATCAAGATGCTGCAGCAAGCAATGGCTGCTGCTATGGCGGGGGCGGAGGACTAATCTACGGTGGTGGAGGTGTTCCCAATTTGCTGACTCAGAAACCGTTAGGGAGCAGCATAGGTACGAAGAAAGATAGGCACAGCAAGATTCACACATCTCAGGGGTTGAGGGACAGAAGGGTGAGGCTTTCAAGCGAAATAGCGCGCAAGTTCTTTGATCTTCAGGACATGCTGGAGTTCGACAAGCCCAGCAACACGCTCGAATGGCTCTTCACCAAGTCTGAGAATGCAATCAAGGAGCTTGCAAGAAGCAAACATAGCTGCAGCTTCAGCTCCGGCGGCGAGAAATGCTCGTGTTGTGAAGGTAGTGATCAAGCAGCTGGGGTGGTGGTGGTGCACTCAAGCGAGAAATCATCTATGGCGGGAAGCAGTGATTCTTGTTCCAAAGGGAGGAACAAGTTGAAGTGGACACAGAGAGAAGATGTTTGTGTTCAGACAAAGAAGGAGTCAAGGGATAAAGCAAGGGCAAGAGCAAGAGAGAGAACTTGTTACAAAATGAACAACAACAACAACAATAACAACAATGGAAGATTAATGGTGCAAGATTTGGAGGACAAAACCCCTGCACTGCAACAATTTGAGCCTTGTGGAAGATGGTCTAATAACCCTCATCAGATTCTTCAACAACAACCTTACTATAACCCTCTTCGTCATCATCATCATCACATACTTGGAGATGCTTTTATTAACAATGTCATTGATGATTCTATCATGATTAAAAGGAACATGAATCGTGACCAAAACCTTATTGCTATCCCTAATAACAACAACATTATTGTTAATGATGATGAGTACCAAAACCACTCGTCACCGTTCCTTTATTCAACTACTCCAAATTGGGACACCGACGAAACCATAAATGGTTGCTCCAACTTTCGTGCAATGGCAGCCACAATGAATAATCTATCAACATGCTTCACGGACCAGTAA 1239 0.4318 MFSSTYDSNPFPNFPSSSSSSSYPNNNNNNNTLPFYIDPHNNNDFATTLLHHHDPSSLLVSPFIPSSEVPFPSSAEEAVVVAAMLDQDAAASNGCCYGGGGGLIYGGGGVPNLLTQKPLGSSIGTKKDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTKSENAIKELARSKHSCSFSSGGEKCSCCEGSDQAAGVVVVHSSEKSSMAGSSDSCSKGRNKLKWTQREDVCVQTKKESRDKARARARERTCYKMNNNNNNNNNGRLMVQDLEDKTPALQQFEPCGRWSNNPHQILQQQPYYNPLRHHHHHILGDAFINNVIDDSIMIKRNMNRDQNLIAIPNNNNIIVNDDEYQNHSSPFLYSTTPNWDTDETINGCSNFRAMAATMNNLSTCFTDQ* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4378 412 ProSiteProfiles TCP domain profile. 126 184 IPR017887 -
Amo19g4378 412 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 35 407 - -
Amo19g4378 412 MobiDBLite consensus disorder prediction 1 25 - -
Amo19g4378 412 ProSiteProfiles R domain profile. 251 268 IPR017888 -
Amo19g4378 412 Pfam TCP family transcription factor 125 271 IPR017887 -
Amo19g4378 412 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 35 407 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4378 Amo-Chr19 160790015 160791253 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4378 125 188 TCP Transcription Factor Family AT1G67260 70.312 1.38e-23 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Amo19g4378 TCP 9.7e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4378 - - adu:110275773 485.723