Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4344 ATGGAGCTTCACAAGCGCCACGTCCACAGCCTCTCCGAGAGGAAGGGCCAGAAGCGCAAGCTCGATGACCAGCTCCATGCCAACCGCCAGATCTCGCCGCCACCGCCAACGGCCGACGAGCGCGCCGCCATCCTCTGCCAAGCCTCTGACCAGGTCCGCGTCCTTGACTCCACCTTCACGTGGAACGAAGCCGATCGAGCTGCCGCTAAGCGCGCCACTCACACGCTCGCCGATCTCGCCAAGAACGAGGAAGTTGCTAACGTGATTGTCGAAGGAGGCGCTATTCGAGCTCTGGTTAGGCACCTTCAGGCGCCACCTATCGGCGACGACGACCGTGTGCAGAAGCCGTTGCCGTTTGAGCATGAGGTTGAGAAAGGGAGCGCTTTCGCACTAGGACTACTTGCCGTCAAGCCAGAACATCAACAGCTCATTGTTGACAGTGGTGCATTGATTCATCTTGTTGATCTTTTAAAGAGGCATAAGAATGGTTTAACTTCTCGTGCCATTAATAGTCTCATTCGTAGGGCTGCAGATGCCATCACTAATCTTGCTCACGAGAACAGCAGCATTAAAACTCGTGTCAGGATGGAAGGTGGAATTCCACCACTTGTTCATTTGCTTGAATTTGCAGATCCAAAAGTACAAAGAGCAGCTGCTAGTGCACTGCGAACCCTGGCTTTCAAAAATGATGAAAATAAAAATCAGATCGTTGAATGCAATGCTCTTCCAAATCTAATTCTAATGCTTCGCTCTGAAGATGCAGCTATTCATTATGAAGCGGTTGGTGTGATTGGAAATCTGGTTCACTCTTCCCCTAATATAAAGAAAGAAGTTCTTCTTGCTGGAGCTTTACAACCGGTTATTGGATTACTTAGCTCGTGCTGCTCTGAAAGCCAGAGGGAAGCAGCCTTGTTACTTGGACAGTTTGCAGCAACTGATTCAGATTGTAAGGTTCACATTGTACAGAGAGGTGCTGTCCAGCCATTGATAGAGATGCTTCAATCTCCAGATGTACAACTCCAAGAAATGTCTGCCTTTGCGTTGGGGAGATTAGCCCAGGACACACATAACCAAGCTGGCCTTGCACATAATGGTGGCTTGGTGCCATTGCTGAATCTTCTTGATTCAAAAAATGGGTCTTTGCAACATAATGCTGCTTTTGCTCTTTATGGCCTTGCAGATAATGAGGATAATGTGTCCGATTTTATTAGGGTTGGTGGAGTTCAGAGGTTGCAGGAAGGAGAGTTTATCGTTCAAGCAACTAAAGATTGTGTTGCAAAGACATTGAAAAGATTAGAAGAGAAGATTCGTGGCCGTGTGCTGAAGCATTTACTGTATCTTATGCGAGTTTCAGAAAAGGGTTTGCAAAGGCGTATTGCTTTGGCTCTTGCACATCTTTGTTCAGCAGGTGATCAAAGAGGGATTTTTATCGAACACCATGGTCTCGAGTTGCTTATTGGGCTTCTTGGCTCATCTGGCTCTAAGCAGCAACTTGATGGTGCTGTTGCTTTATGCAAGTTGGCCAACAAAGCCTCAACTTTGTCTCCCGTGGATGCTGCCCCCCTTTCTCCAACACCACAGGTATATTTAGGGGAGAAGTTTGTAAACAATGCCACGTTGTCAGATGTTACATTTTTGGTTGAAGGCAAACGGTTTTATGCTCACAGAATATGTCTACTAGCGTCTTCAGATGCATTTCGTGCAATGTTTGATGGTGGTTATAGGGAGAAGGATGCAAAGGATATTGAGATTCCAAATATTAGATGGGAAATTTTTGAGCTGATGATGAGATTTATATATACTGGATCAACTGAAATCACTCTGGATATAGCTCAAGACCTTCTCCGAGCAGCTGATCAATATCTATTAGAAGGACTTAAGAGGCTCTGTGAATACACAATTGCAAAGGATATATCACTGGAGAACGTGTCAAGTATGTATGAACTTTCAGAAGCATTTAGTGCAATATCATTGAGGCACTCGTGCATCCTTTTTATATTGGAGCAATTTGATAAATTGAGTGCAAGGCCTGGGTATTTTCTGATTCTCCCAATCCTGTGTTTACTCCTTGTAACTTCTTTAGCTCTGAAATCTAGGGTTTTCAGAAGCATTGTTTCTGTTAATTCATGA 2130 0.4526 MELHKRHVHSLSERKGQKRKLDDQLHANRQISPPPPTADERAAILCQASDQVRVLDSTFTWNEADRAAAKRATHTLADLAKNEEVANVIVEGGAIRALVRHLQAPPIGDDDRVQKPLPFEHEVEKGSAFALGLLAVKPEHQQLIVDSGALIHLVDLLKRHKNGLTSRAINSLIRRAADAITNLAHENSSIKTRVRMEGGIPPLVHLLEFADPKVQRAAASALRTLAFKNDENKNQIVECNALPNLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKKEVLLAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVQPLIEMLQSPDVQLQEMSAFALGRLAQDTHNQAGLAHNGGLVPLLNLLDSKNGSLQHNAAFALYGLADNEDNVSDFIRVGGVQRLQEGEFIVQATKDCVAKTLKRLEEKIRGRVLKHLLYLMRVSEKGLQRRIALALAHLCSAGDQRGIFIEHHGLELLIGLLGSSGSKQQLDGAVALCKLANKASTLSPVDAAPLSPTPQVYLGEKFVNNATLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKDAKDIEIPNIRWEIFELMMRFIYTGSTEITLDIAQDLLRAADQYLLEGLKRLCEYTIAKDISLENVSSMYELSEAFSAISLRHSCILFILEQFDKLSARPGYFLILPILCLLLVTSLALKSRVFRSIVSVNS* 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4344 709 Gene3D Potassium Channel Kv1.1; Chain A 530 667 IPR011333 -
Amo19g4344 709 SUPERFAMILY ARM repeat 438 510 IPR016024 -
Amo19g4344 709 SUPERFAMILY POZ domain 533 636 IPR011333 -
Amo19g4344 709 Gene3D - 169 269 IPR011989 -
Amo19g4344 709 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 1 681 IPR044282 -
Amo19g4344 709 SUPERFAMILY ARM repeat 63 413 IPR016024 -
Amo19g4344 709 MobiDBLite consensus disorder prediction 1 38 - -
Amo19g4344 709 CDD BTB_POZ_ARIA_plant 528 643 - -
Amo19g4344 709 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 198 233 IPR000225 GO:0005515
Amo19g4344 709 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 1 681 - -
Amo19g4344 709 Gene3D - 417 524 IPR011989 -
Amo19g4344 709 Pfam BTB/POZ domain 535 635 IPR000210 GO:0005515
Amo19g4344 709 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 148 198 IPR000225 GO:0005515
Amo19g4344 709 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 240 282 IPR000225 GO:0005515
Amo19g4344 709 MobiDBLite consensus disorder prediction 1 26 - -
Amo19g4344 709 SMART BTB_4 541 638 IPR000210 GO:0005515
Amo19g4344 709 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 365 407 IPR000225 GO:0005515
Amo19g4344 709 ProSiteProfiles BTB domain profile. 541 608 IPR000210 GO:0005515
Amo19g4344 709 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 324 366 IPR000225 GO:0005515
Amo19g4344 709 Gene3D - 37 168 IPR011989 -
Amo19g4344 709 Pfam Armadillo/beta-catenin-like repeat 229 268 IPR000225 GO:0005515
Amo19g4344 709 Pfam Armadillo/beta-catenin-like repeat 313 352 IPR000225 GO:0005515
Amo19g4344 709 Pfam Armadillo/beta-catenin-like repeat 194 226 IPR000225 GO:0005515
Amo19g4344 709 SMART arm_5 469 509 IPR000225 GO:0005515
Amo19g4344 709 SMART arm_5 354 394 IPR000225 GO:0005515
Amo19g4344 709 SMART arm_5 313 353 IPR000225 GO:0005515
Amo19g4344 709 SMART arm_5 187 227 IPR000225 GO:0005515
Amo19g4344 709 SMART arm_5 271 311 IPR000225 GO:0005515
Amo19g4344 709 SMART arm_5 82 136 IPR000225 GO:0005515
Amo19g4344 709 SMART arm_5 137 185 IPR000225 GO:0005515
Amo19g4344 709 SMART arm_5 229 269 IPR000225 GO:0005515
Amo19g4344 709 Gene3D - 270 415 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4344 Amo-Chr19 160226043 160232409 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4344 297 411 U-box Gene Family AT3G46510 29.915 4.07e-06 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Amo19g4344 BTB 5e-26 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4344 - - aip:107616115 1230.31