Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4313 ATGGAACCGGGCATGAGATCCGATGGCCCTTCTGGGGCTTTGGTGAAGAACAGGAGATCTTCAGGGTGTTTGGTTGTTAGGAAGAAAGGTGATGGATTGAGTGGTGGGGTTGGTAGTTCTTTCAGCTCCAGGAAGTTGAATGCATCAAAGAAAGGGAAGAAGAGGCCCAAGGTTGAGTTAAGTAGTAGCGATTCGGAATCGAGTCAGGAGCTATTGATGCCATCTTCTAGAGGGCTTGGTCCTGAGACCATTCGAGTATGCAATGGTTTGACAGCTGTTAAGCGGGACGAGGCTGGTGATGGTGGAACTGGAAGGAAGCGGGAGAGGTTTGAGGACATTAGTCATAACGGTGATGAGATGGGGGAGGGAAATGGTTCAGAGAGGAGGGAAAAGAAACTTAGTAAGATTGATGTGTTTGATTTCGATGAATACGATGCTATGGATGCAGACATGATGAGAAGGAGCCATGTAGATAGCAATGGGGGCGGCTTTGGAGGGGAAAGGCTTGGGGGAGCAATGCATGCTGCTAGAGGTGGCACTGATAGGGAATTCAAAACTGGTTCAAGCAGACACACCCTTAATAAGAGAAAGAACTCCCATTGTGATAAGGCAAGTCACTTGCACCCAAGAGATAGTAAATTAAAGAAGTGGGATGCAGCTCAGCATCCTCAGCCCGTGCCGAAGGAGAAGTTTAATTCTGATGAATCCATTAGGGTTCAAGGGAAAAATGGTGTTTTAAAGGTGATGGTTAATAAGAAGATGTGTAAGCCATCAAAGCACGTTGATAATCGCAAACATGTAGAAGGGCAACGAAGTTTGAGGGCTGAGGGCATTGCCAAGAAGAATGTTCTGATCCATCCTTCATCTTGCTTGGAAAAAAAACCTGTTAAGAAACAAGGTTTACATGCTAGGACAGAGAAGAAATTGGCAGCAAGAAGAAAATCTTTGTCAAGTAACGACAGTAAGGGTGATGACCAGGATTCAGATAACAGTGGCACATCATTGAATGTGGGAGTGAAGTGCATTAAAGCTTTCAAGTCTTTAAAGAGGGGGACCTCGGACGATGAACAGACTCCTAAGCATGAAAAGACCCCAACCACAGCAGGAACTAAAAAGGAGAAAATAAGGCGTGGTAGTGGCACAGAAAAGCAGAAGCTACGAGAACAGATACGGGAGATGCTTCTTAATGCAGGTTGGACCATAGACTATCGCCCTCGGAGGAAGAGAGACTATCTTGATGCAGTTTACATTAATCCTGGGGGTACAGCCTATTGGTCCATCATCAAGGCCTATGAGGCGCTTCAGAAGCAATTGAGTGCTGACGACCCTGGGGCCAAGCCCAAAGGGGAGTGCTCTTCTTTTGCTCGTATCAGAGATGATGTGCTTAGTCAGTTAACAAGGAATACTCAGAAGAAGATGGAGAGAGAATTAAAGAAGAAGAAGAAGAAGAAACAGAAGAAGGAAAGAGATGATAGTGAGAGTGATAGTGGAAAAGAACCTCGCATTAGGAGATCTTTAAGCAACAAGCGTGATATGAATGGCATGGAAAGTGATAGTGATGAAGAGAAATTAAGCTCCTTTTTAAAGCGGGAGCGTAAGTCGATGAAAAATAAAATGATTGAAAATACTGTTAACAGTTGTAGATCTACAAGCAAGAAAGCTGACCTTCACACAGATGAAGGAACTGAAAAATCACTTTTAGGAAATGATCCTCATCAACTACATGGGAGGAAAAGTAAGAAACATGGAAGGTGCACTTTATTGGTTCGTAATTCCAACATAGGGTCAAATTCAGATTCTGATGACTATGTTCCATATATGGGCAAACGAACGGTGCTTTCCTGGTTGGTTGACTCTGGAGCTGTACAGTTAAGCCAAAAGGTTCAGTATCGTAGAAGGAAACGTGTAATGCAGGAGGGATGGGTCACCAGGGATGGGATTCATTGTAGTTGCTGTAGTAAAATACTCACTGTTTCCAAGTTTGGGCTTCATGCAGGAAGTAAATTGCGCCAGCCATATCAAAACATATATTTGGATTCTGGAGATTCTCTTCTACAGTGCCAGATAGATGCATGGAATAAACAAGAGAATTCTGAGAAAATTGCTTTCCATGCAGTAGATATTGATGGTAATGATCCAAATGATGATACTTGTGGTATATGTGGAGATGGAGGGGATTTGATCTGTTGTGATGGTTGTCCATCAACGTTTCATCTGAGTTGCTTGAATATACAGATGCTCCCCCCCGGTGAATGGCATTGTCCGAATTGCACATGCAAATTTTGTGGAGTAGTCCGTGGTCCTGTAAACAAAGAAGATGAATCAACTTTAAATGCCCTACATAGATGCAACTTATGCGATAAAAAATTTCATGAATGTTGTGCTAAGGAGATGAAAACCCTTCCTACTAACTCCGATATGTCAAGCCCTTCCTTTTGCGGAAGGGACTGCAAAGAGCTTTCTGAGCACTTGAAGAAATACCTTGGTACCAGGCATGAAATAGATGGAGGCTTCACATGGTCTCTCATTCATAGAACAGAAGACGACTCAGAGGCATCTAGTAGGGGAATTATGCAGAGGGTTGAATGGAACTCCAAGTTAGCTGTTGCACTGACTGTGATGAATGAATGCTTTTTGCCAGTTATTGATAGGAGAAGTGGGGTCAATTTAATACATAATGTTTTATATAATAGTGGGTCAAACTTCAGCCGGTTGAATTACACTGGCTTTTATACTGCGATTTTGGAGCAAGGCGATGAAATAATTTCTGCAGCTTCTATCAGGTTCCATGGGACCAAGTTAGCAGAGATGCCATTCATTGGAACTCGCCATATGTATAGGCATCAGGGGATGTTGCGCAGGCTTTTTTCTGCCATTGAATTGGCCCTTTGCTCTCTGAAGGTTGAGAAATTGGTTATTCCAGCAATCTCTGAACTGATTCATACATGGACAACAGTTTTTGGCTTCATGCATCTTGAGGAATCACTCAGACAGGAAATGAGGTCATTGAATATGTTGGTCTTCCCCGGTATAGATATGTTGGAGAAAGTGCTAACCAAACAAGGAAAACTTGATGGTGTTGAGAAAATGGAAACTAGAGATGAATTTGTTACTAAGCCTAATATGGCTGGTAAGTTGGATATGAATTCCTCAGCTCTGGAAGATCCTGAACGGAGTGATCATGCTAATTCAAATCCTGACAATGAGATAAACGACGACTCTAGTGATGCTTCTCAAGAACAGGATAATCACATTTTGGTTGACAGCACCAAGTCTCATTCTGCAGATAGATCATCTGATTTTGTTTCAAATAAATGTGTTTCTCCTTCTAGTACCAGGGATGATGTGCTAGAAACAAACAATAAAGCAGTGACAGCTTTTCCTGGTAATAATAAATTGCATCCCTCTGTGAAATGTCAAAATCACACTTCTTTGAGCAGTCCTCCATTAGTTTCTCCATCTCCAGATTGCCATGAACTTACTGCTTTGCATTCGGTGAGTGTATGTTCGGACCCTGATTCTGCGAAAAATCTGGCACAACCTGTTTCTGATGGGAAATGTCACATGCACACTGATGACGTTAATCCAGGGTTGGATTCTCAAGTGGGAGATAATGCTTTGTCTTCTAAAGAGGTTGATATGAATGATGCCCGTGATGAGGTTCTTGAATCAGTGAATTTATCTCAGGGTAAAATTACGAAGGAGAAAAATGAAGTCGTGGATGTGTCTGGTTTTGTTCCCAATCATGCTGATGAGAGTTCTTTGCAAGTGAAATCTGATTTGATGGATGAAATTGTATTGGAGGGAGAAAAGAATTTGGACAAAGAGGTTGCATCACGTGAAATGTGTGTGGATGAAACTGGCCTTAGGGCATCTGGTGCTAGTTCTTAA 3891 0.4241 MEPGMRSDGPSGALVKNRRSSGCLVVRKKGDGLSGGVGSSFSSRKLNASKKGKKRPKVELSSSDSESSQELLMPSSRGLGPETIRVCNGLTAVKRDEAGDGGTGRKRERFEDISHNGDEMGEGNGSERREKKLSKIDVFDFDEYDAMDADMMRRSHVDSNGGGFGGERLGGAMHAARGGTDREFKTGSSRHTLNKRKNSHCDKASHLHPRDSKLKKWDAAQHPQPVPKEKFNSDESIRVQGKNGVLKVMVNKKMCKPSKHVDNRKHVEGQRSLRAEGIAKKNVLIHPSSCLEKKPVKKQGLHARTEKKLAARRKSLSSNDSKGDDQDSDNSGTSLNVGVKCIKAFKSLKRGTSDDEQTPKHEKTPTTAGTKKEKIRRGSGTEKQKLREQIREMLLNAGWTIDYRPRRKRDYLDAVYINPGGTAYWSIIKAYEALQKQLSADDPGAKPKGECSSFARIRDDVLSQLTRNTQKKMERELKKKKKKKQKKERDDSESDSGKEPRIRRSLSNKRDMNGMESDSDEEKLSSFLKRERKSMKNKMIENTVNSCRSTSKKADLHTDEGTEKSLLGNDPHQLHGRKSKKHGRCTLLVRNSNIGSNSDSDDYVPYMGKRTVLSWLVDSGAVQLSQKVQYRRRKRVMQEGWVTRDGIHCSCCSKILTVSKFGLHAGSKLRQPYQNIYLDSGDSLLQCQIDAWNKQENSEKIAFHAVDIDGNDPNDDTCGICGDGGDLICCDGCPSTFHLSCLNIQMLPPGEWHCPNCTCKFCGVVRGPVNKEDESTLNALHRCNLCDKKFHECCAKEMKTLPTNSDMSSPSFCGRDCKELSEHLKKYLGTRHEIDGGFTWSLIHRTEDDSEASSRGIMQRVEWNSKLAVALTVMNECFLPVIDRRSGVNLIHNVLYNSGSNFSRLNYTGFYTAILEQGDEIISAASIRFHGTKLAEMPFIGTRHMYRHQGMLRRLFSAIELALCSLKVEKLVIPAISELIHTWTTVFGFMHLEESLRQEMRSLNMLVFPGIDMLEKVLTKQGKLDGVEKMETRDEFVTKPNMAGKLDMNSSALEDPERSDHANSNPDNEINDDSSDASQEQDNHILVDSTKSHSADRSSDFVSNKCVSPSSTRDDVLETNNKAVTAFPGNNKLHPSVKCQNHTSLSSPPLVSPSPDCHELTALHSVSVCSDPDSAKNLAQPVSDGKCHMHTDDVNPGLDSQVGDNALSSKEVDMNDARDEVLESVNLSQGKITKEKNEVVDVSGFVPNHADESSLQVKSDLMDEIVLEGEKNLDKEVASREMCVDETGLRASGASS* 1297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4313 1296 CDD PHD2_CHD_II 718 757 - -
Amo19g4313 1296 MobiDBLite consensus disorder prediction 98 133 - -
Amo19g4313 1296 MobiDBLite consensus disorder prediction 291 327 - -
Amo19g4313 1296 ProSiteProfiles Zinc finger PHD-type profile. 715 760 IPR019787 -
Amo19g4313 1296 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER PROTEIN 1 1187 - -
Amo19g4313 1296 MobiDBLite consensus disorder prediction 546 580 - -
Amo19g4313 1296 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 707 834 IPR013083 -
Amo19g4313 1296 MobiDBLite consensus disorder prediction 1051 1067 - -
Amo19g4313 1296 Pfam PHD-finger 718 760 IPR019787 -
Amo19g4313 1296 ProSitePatterns Zinc finger PHD-type signature. 718 757 IPR019786 -
Amo19g4313 1296 SMART PHD_3 717 758 IPR001965 -
Amo19g4313 1296 SMART PHD_3 759 818 IPR001965 -
Amo19g4313 1296 SUPERFAMILY FYVE/PHD zinc finger 707 766 IPR011011 -
Amo19g4313 1296 Pfam Tify domain binding domain 640 690 IPR032308 -
Amo19g4313 1296 MobiDBLite consensus disorder prediction 349 383 - -
Amo19g4313 1296 MobiDBLite consensus disorder prediction 462 525 - -
Amo19g4313 1296 MobiDBLite consensus disorder prediction 1096 1114 - -
Amo19g4313 1296 MobiDBLite consensus disorder prediction 1 133 - -
Amo19g4313 1296 MobiDBLite consensus disorder prediction 486 525 - -
Amo19g4313 1296 MobiDBLite consensus disorder prediction 258 333 - -
Amo19g4313 1296 MobiDBLite consensus disorder prediction 1039 1114 - -
Amo19g4313 1296 Coils Coil 470 490 - -
Amo19g4313 1296 MobiDBLite consensus disorder prediction 198 218 - -
Amo19g4313 1296 MobiDBLite consensus disorder prediction 158 236 - -
Amo19g4313 1296 PANTHER PHD FINGER FAMILY PROTEIN 1 1187 - -
Amo19g4313 1296 MobiDBLite consensus disorder prediction 552 574 - -
Amo19g4313 1296 MobiDBLite consensus disorder prediction 258 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4313 Amo-Chr19 159923535 159930257 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4313 1 1131 PHD Transcription Factor Family AT4G14920 44.569 0.0 848
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Amo19g4313 TDBD 1.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4313 - - adu:107466994 1862.81