Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4307 ATGGAGCTTCACAAGCGCCACGTCCACAGCCTCTCCGAGAGGAAGGGCCAGAAGCGCAAGCTCGATGACCAGCTCCATGCCAACCGCCAGATCTCGCCGCCACCGCCAACGGCTGACGAGCGCGCCGCTATCCTCTGCCAAGCCTCTGACCAGGTCCGCGTCCTTGACTCCACCTTCACGTGGAACGAAGCCGATCGAGCTGCCGCTAAGCGCGCCACTCACACGCTCGCCGATCTCGCCAAGAACGAGGAAGTTGCTAACGTGATTGTCGAAGGAGGCGCTATTCGAGCTCTGGTTAGGCACCTTCAGGCGCCACCTATCGGCGACGACGACCGTGTGCAGAAGCCGTTGCCGTTTGAGCATGAGGTTGAGAAAGGGAGCGCTTTCGCACTAGGACTACTTGCCGTCAAGCCAGAACATCAACAGCTCATTGTTGACAGTGGTGCATTGATTCATCTTGTTGATCTTTTAAAGAGGCATAAGAATGGTTTAACTTCTCGTGCCATTAATAGTCTCATTCGTAGGGCTGCAGATGCCATCACTAATCTTGCTCATGAGAACAGCAGCATTAAAACTCGTGTCAGGATGGAAGGTGGAATTCCACCACTTGTTCATTTGCTTGAATTTGCAGATCCAAAAGTACAAAGAGCAGCTGCTAGTGCACTGCGAACCCTGGCTTTCAAAAATGATGAAAATAAAAATCAGATCGTTGAATGCAATGCTCTTCCAAATCTAATTCTAATGCTTCGCTCTGAAGATGCAGCTATTCATTATGAAGCGGTTGGTGTGATTGGAAATCTGGTTCATTCTTCCCCTAATATAAAGAAAGAAGTTCTTCTTGCTGGAGCTTTACAACCAGTTATTGGATTACTTAGCTCGTGCTGCTCTGAAAGCCAGAGGGAAGCGGCCTTGTTACTTGGACAGTTTGCAGCAACTGATTCAGATTGTAAGGTTCACATTGTACAGAGAGGTGCTGTCCAGCCATTGATAGAGATGCTTCAATCTCCAGATGTACAACTCCAAGAAATGTCTGCCTTCGCGTTGGGGAGATTAGCCCAGGACACACATAACCAAGCTGGCCTTGCACATAATGGTGGCTTGGTGCCATTGCTGAATCTTCTTGATTCAAAAAATGGGTCTTTGCAGCATAATGCTGCTTTTGCTCTTTATGGCCTTGCAGATAATGAGGATAATGTGTCCGATTTTATTAGGGTTGGTGGAGTTCAGAGGTTGCAGGAAGGAGAGTTTATCGTTCAAGCAACTAAAGATTGTGTTGCAAAGACATTGAAAAGATTAGAAGAGAAGATTCGTGGCCGTGTGCTGAAGCATTTACTGTATCTTATGCGAGTTTCAGAAAAGGGTTTGCAAAGGCGTATTGCTTTGGCTCTTGCACATCTTTGTTCAGCAGGTGATCAAAGAGGGATTTTTATCGAACACCATGGTCTCGAGTTGCTTATTGGGCTTCTTGGCTCATCTGGCTCTAAGCAGCAACTTGATGGTGCTGTTGCTTTATGCAAGTTGGCCAACAAAGCCTCAACTTTGTCTCCCATGGATGCTGCCCCCCTTTCTCCAACACCACAGGTATATTTAGGGGAGAAGTTTGTAAACAATGCCACGTTGTCAGATGTTACATTTTTGGTTGAAGGCAAACGGTTTTATGCTCACAGAATATGTCTACTAGCGTCTTCAGATGCATTTCGTGCAATGTTTGATGGTGGTTATAGGGAGAAGGATGCAAAGGATATTGAGATTCCAAATATTAGATGGGAAATTTTTGAGCTGATGATGAGATTTATATATACTGGATCAACTGAAATCACTCTGGATATAGCTCAAGACCTTCTCCGAGCAGCTGATCAATATCTATTAGAAGGACTTAAGAGGCTCTGTGAATACACAATTGCAAAGGATATATCACTGGAGAACGTGTCAAGTATGTATGAACTTTCAGAAGCATTTAGTGCAATATCATTGAGGCACTCGTGCATCCTTTTTATATTGGAGCAATTTGATAAATTGAGTGCAAGGCCTGGGTATTTTCTGATTCTCCCAATGTGTTTACTCCTTGTAACTTCTTTAGCTCTGAAATTTAGGGTTTTCAGAAGCATTGTTTCTGTTAATTCATGA 2127 0.4504 MELHKRHVHSLSERKGQKRKLDDQLHANRQISPPPPTADERAAILCQASDQVRVLDSTFTWNEADRAAAKRATHTLADLAKNEEVANVIVEGGAIRALVRHLQAPPIGDDDRVQKPLPFEHEVEKGSAFALGLLAVKPEHQQLIVDSGALIHLVDLLKRHKNGLTSRAINSLIRRAADAITNLAHENSSIKTRVRMEGGIPPLVHLLEFADPKVQRAAASALRTLAFKNDENKNQIVECNALPNLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKKEVLLAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVQPLIEMLQSPDVQLQEMSAFALGRLAQDTHNQAGLAHNGGLVPLLNLLDSKNGSLQHNAAFALYGLADNEDNVSDFIRVGGVQRLQEGEFIVQATKDCVAKTLKRLEEKIRGRVLKHLLYLMRVSEKGLQRRIALALAHLCSAGDQRGIFIEHHGLELLIGLLGSSGSKQQLDGAVALCKLANKASTLSPMDAAPLSPTPQVYLGEKFVNNATLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKDAKDIEIPNIRWEIFELMMRFIYTGSTEITLDIAQDLLRAADQYLLEGLKRLCEYTIAKDISLENVSSMYELSEAFSAISLRHSCILFILEQFDKLSARPGYFLILPMCLLLVTSLALKFRVFRSIVSVNS* 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4307 708 Gene3D - 417 524 IPR011989 -
Amo19g4307 708 SUPERFAMILY POZ domain 533 636 IPR011333 -
Amo19g4307 708 Gene3D - 169 275 IPR011989 -
Amo19g4307 708 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 1 682 - -
Amo19g4307 708 Gene3D - 276 414 IPR011989 -
Amo19g4307 708 SUPERFAMILY ARM repeat 64 413 IPR016024 -
Amo19g4307 708 MobiDBLite consensus disorder prediction 1 38 - -
Amo19g4307 708 CDD BTB_POZ_ARIA_plant 528 643 - -
Amo19g4307 708 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 198 233 IPR000225 GO:0005515
Amo19g4307 708 Gene3D - 37 168 IPR011989 -
Amo19g4307 708 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 148 198 IPR000225 GO:0005515
Amo19g4307 708 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 240 282 IPR000225 GO:0005515
Amo19g4307 708 MobiDBLite consensus disorder prediction 1 26 - -
Amo19g4307 708 SMART BTB_4 541 638 IPR000210 GO:0005515
Amo19g4307 708 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 365 407 IPR000225 GO:0005515
Amo19g4307 708 Pfam Armadillo/beta-catenin-like repeat 229 268 IPR000225 GO:0005515
Amo19g4307 708 Pfam Armadillo/beta-catenin-like repeat 194 226 IPR000225 GO:0005515
Amo19g4307 708 Pfam Armadillo/beta-catenin-like repeat 313 352 IPR000225 GO:0005515
Amo19g4307 708 ProSiteProfiles BTB domain profile. 541 608 IPR000210 GO:0005515
Amo19g4307 708 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 324 366 IPR000225 GO:0005515
Amo19g4307 708 Pfam BTB/POZ domain 535 635 IPR000210 GO:0005515
Amo19g4307 708 SMART arm_5 354 394 IPR000225 GO:0005515
Amo19g4307 708 SMART arm_5 469 509 IPR000225 GO:0005515
Amo19g4307 708 SMART arm_5 313 353 IPR000225 GO:0005515
Amo19g4307 708 SMART arm_5 187 227 IPR000225 GO:0005515
Amo19g4307 708 SMART arm_5 271 311 IPR000225 GO:0005515
Amo19g4307 708 SMART arm_5 82 136 IPR000225 GO:0005515
Amo19g4307 708 SMART arm_5 137 185 IPR000225 GO:0005515
Amo19g4307 708 SMART arm_5 229 269 IPR000225 GO:0005515
Amo19g4307 708 Gene3D Potassium Channel Kv1.1; Chain A 530 667 IPR011333 -
Amo19g4307 708 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 1 682 IPR044282 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4307 Amo-Chr19 159751700 159758101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4307 297 411 U-box Gene Family AT3G46510 29.915 3.90e-06 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Amo19g4307 BTB 4.9e-26 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4307 - - aip:107616115 1231.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g4307 19 159751700 159758101 Amo19g4307 19 159751700 159758101 ECH
Amo05g2165 05 46961688 46969172 Amo19g4307 19 159751700 159758101 PCT
Amo19g4307 19 159751700 159758101 Amo05g2165 05 46961688 46969172 PCT