Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4301 ATGGTTATGGCTCCATTCAAGGAGGAGCAGCCTCAGCCACCGCCCATCGACCACGCCACCACCCTCATCTGTGCTCTTAACTTCCTCTCCCGTGATCTCCCTCTCCCTCCCCACCTCCTCAGTTCTGTTTCTACCATCTATCACTCTCACCCTTCTTCGCAGAACCAGCTCCAAGATGATATAGGGAATTCTAGTGAAAATTTAATTACGGACCTTGAAGGTGCATTGTTTAGGCAACGCTCTTCGGGTTCCGAATTGGAGAGAGCAAGGGAAAGCCGTTATCAAAATCGGATACAGCATCGATTAAATGAACTTGAAGGATTGCCTTCAACAAGGGGAGAGGATTTGCAAACAAAGTGCCTGCTTGAACTTTATGGTCTAAAGCTACGAGAGTTGCATTCGAAGGTTCGGTCTGATGTGAGTTCTGAGTACTGGCTGAATGTTAAATGTGCATACCCCGATAGGCAATTGTTTGATTGGGGCATGATGAGGTTGCAGCGTCCGCCATATGGTGTTGGAGATCCCTTTGCCATGGATGCTGATGATCAAATAAGGAAAAAAAGGGATGCTGAGAGACTATCGAGATTAGAAGAGGAGGAAAAAACTCATATAGAAACTAGAAAAAGAAAATTTTTTGCAGAAATACTCAATACCGTCCGTGAGTTTCAATTGCAAATTCAAGCTGCTGTGAAGCGGAGAAAACAGAGGAATGATGGTATTCAGGCATGGCATGGAAGGCAAAGGCAACGTGCCACACGGGCTGAGAAATTAAGGTTCCAAGCATTAAAAGCTGATGATCAAGAAGCTTACATGAGAATGGTGAAGGAGAGTAAGAATGAAAGATTAACCACGCTTCTTGAAGAAACCAATAAACTACTAGTAAATTTAGGAGCTGCTGTTCAACGTCAAAAGGACTCCAAACATTCAGATGGTATAGAACCCTTGGAAGATTCTGAAGTTGATTTACCTGAGTCAGACGCTTCTAAGAATGAAAAGGAATCACCTCTTGATGAAGAGATGGATATGATAGATTCTGATCATAATGGTGACACTAGTGATTTACTCGAAGGTCAGCGGCAATACAATTCTGCCATACATTCGATTCAAGAAAAGGTTACTGAGCAACCATCTATTCTTCAAGGTGGAGAATTAAGACCATATCAGATAGAAGGGCTCCAGTGGATGCTTTCTTTGTTTAATAACAACTTAAATGGAATTTTGGCTGATGAAATGGGTCTTGGGAAGACAATACAAACAATTTCGTTAATAGCACATCTTATGGAGCACAAGGGTGTTACTGGTCCCCATTTGATTGTTGCTCCAAAGGCTGTTCTGCCAAATTGGATGAATGAATTCTCAACATGGGTTCCAAGCATAACAACTATTCTTTATGATGGACGGTTGGATGAGAGGAAAGCAATGAAGGATGATTTGTTAGGGGAGAGGAAATTTAATGTTCTGCTAACACACTATGATCTTATAATGAGAGATAAAGCAATTCTCAAGAAAATTCACTGGATCTACCTAATTGTGGATGAAGGACATCGGTTGAAGAATCATGAATCTGCTCTAGCAAGGACACTGGAAGCCGGCTATCACATTCAACGCAGACTCCTGTTAACTGGCACCCCAATTCAAAACAGCTTGCAGGAGTTGTGGTCCCTGCTTAATTTTCTCCTTCCAAACATTTTCAACTCTGTTCAGAATTTCGAGGACTGGTTTAATGCCCCTTTTGCTGATCGAGTTGATGTCTCTTTAACAGATGAAGAACAACTTTTGATTATTCGACGTCTACATCAAGTAATAAGACCCTTCATATTAAGAAGAAAAAAGGATGAGGTGGAAAAATTTCTTCCCTCGAAATCTCAGGTCATACTCAAATGTGATATGTCAGCCTGGCAGAAAGTATATTATCAACAAGTCACTGACGTAGGCAGAGTTGGCTTAGACAATGGTTCTGGAAAATCAAAGAGCTTGCAGAACTTAACAATGCAACTCAGAAAGTGTTGCAACCATCCATACCTCTTTGTGGGAGATTATGATATGTATAACCGTAAGGAGGAGATTGTCAGAGCATCAGGTAAGTTTGAACTTCTTGACCGTTTGCTCCCAAAACTTCGCAGAGCAGGCCACAGAGTCCTCCTTTTTTCACAAATGACTAGACTCATGGATATTCTCGAGATTTATTTGAGACTTCATGATTTTAAGTATCTAAGACTTGATGGCTCGACAAAAACGGAGGAAAGAGGCACTTTATTACGAAAATTCAATGCTCCTGACTCCCCATACTTCATGTTTCTCTTGAGCACCCGTGCTGGAGGTCTTGGTTTGAACTTGCAAACGGCAGATACTGTTATAATATTTGACAGTGATTGGAACCCCCAAATGGATCAACAAGCAGAGGATCGAGCACATCGCATTGGTCAAAAGAAAGAAGTTAGAGTTTTCGTGTTGGTTAGTGTAGGATCAATTGAAGAGGTGATTTTAGAGCGTGCAAAACAAAAGATGGGCATTGATGCAAAAGTCATCCAGGCAGGACTTTTCAACACAACTTCGACAGCTCAGGACAGAAGAGAAATGCTAGAGGAGATTATGCGTAGAGGTACAAGTTCACTTGGGACAGATGTACCTAGTGAGAGAGAAATTAACCGCCTCGCAGCCCGATCAGATGAGGAATTTTGGCTATTTGAAAAAATGGATGAAGAGAGAAGACTAAAGGAAAATTACAGATCTCGTTTAATGGACGAGCATGAATTGCCAGATTGGGTGTACTCTCCCCTTCATAACAAGGATGAAAAGCTCAAAGATTTCAACAATGGCAGTGCTACTGGAAAGCGTAAAAGAAAAGAAGTTGTTTATGCAGATACATTAAGTGATCTTCAATGGATGAAGGCCGTGGAGAACGGAGAAGATCTATCAAGGCTTTCAGTAAGGGGGAAGAGAAGAGACCACCTCTCATCTGACAACGCAGCACAAGCCAGTGACAATTCAGGGGCCGAAGAAAGGTTCTTGGAACTCCGCGCTGAGAGTGTCCACATGGCAAATGACAGAACAAGTGAAGATAGTTTCCATGTGACCCCTGCCTCAAAGAAACCCAAGCTTGAAGGCGCAAATTCCCATAGGCATGCATACGAGGATGTCAAAGGAAGTGGCTTGAACCAGCATGTGTTATCATGGAACACTCACAGAAAGAAGAGATCAAGYTATGGTCAGAGTTCATCATCTGATACCAAAGGACAGAGTTCAAATGGAAGAGCTAGCTGGAACTGA 3270 0.4217 MVMAPFKEEQPQPPPIDHATTLICALNFLSRDLPLPPHLLSSVSTIYHSHPSSQNQLQDDIGNSSENLITDLEGALFRQRSSGSELERARESRYQNRIQHRLNELEGLPSTRGEDLQTKCLLELYGLKLRELHSKVRSDVSSEYWLNVKCAYPDRQLFDWGMMRLQRPPYGVGDPFAMDADDQIRKKRDAERLSRLEEEEKTHIETRKRKFFAEILNTVREFQLQIQAAVKRRKQRNDGIQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTTLLEETNKLLVNLGAAVQRQKDSKHSDGIEPLEDSEVDLPESDASKNEKESPLDEEMDMIDSDHNGDTSDLLEGQRQYNSAIHSIQEKVTEQPSILQGGELRPYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAHLMEHKGVTGPHLIVAPKAVLPNWMNEFSTWVPSITTILYDGRLDERKAMKDDLLGERKFNVLLTHYDLIMRDKAILKKIHWIYLIVDEGHRLKNHESALARTLEAGYHIQRRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKFLPSKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFVGDYDMYNRKEEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDILEIYLRLHDFKYLRLDGSTKTEERGTLLRKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRLKENYRSRLMDEHELPDWVYSPLHNKDEKLKDFNNGSATGKRKRKEVVYADTLSDLQWMKAVENGEDLSRLSVRGKRRDHLSSDNAAQASDNSGAEERFLELRAESVHMANDRTSEDSFHVTPASKKPKLEGANSHRHAYEDVKGSGLNQHVLSWNTHRKKRSSYGQSSSSDTKGQSSNGRASWN* 1090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4301 1089 Gene3D - 615 912 IPR027417 -
Amo19g4301 1089 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 611 862 IPR027417 -
Amo19g4301 1089 PANTHER ATP-DEPENDENT HELICASE BRM 16 1047 - -
Amo19g4301 1089 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 360 609 IPR027417 -
Amo19g4301 1089 Gene3D - 352 608 IPR038718 -
Amo19g4301 1089 MobiDBLite consensus disorder prediction 303 350 - -
Amo19g4301 1089 MobiDBLite consensus disorder prediction 1014 1048 - -
Amo19g4301 1089 SMART ultradead3 380 573 IPR014001 -
Amo19g4301 1089 MobiDBLite consensus disorder prediction 1014 1089 - -
Amo19g4301 1089 MobiDBLite consensus disorder prediction 322 350 - -
Amo19g4301 1089 Pfam Helicase conserved C-terminal domain 695 808 IPR001650 -
Amo19g4301 1089 CDD SF2_C_SNF 686 819 - -
Amo19g4301 1089 Pfam SNF2-related domain 387 675 IPR000330 GO:0005524|GO:0140658
Amo19g4301 1089 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 698 865 IPR001650 -
Amo19g4301 1089 MobiDBLite consensus disorder prediction 977 999 - -
Amo19g4301 1089 MobiDBLite consensus disorder prediction 1053 1089 - -
Amo19g4301 1089 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 396 562 IPR014001 -
Amo19g4301 1089 PANTHER SNF2/RAD54 HELICASE FAMILY 16 1047 - -
Amo19g4301 1089 SMART helicmild6 724 808 IPR001650 -
Amo19g4301 1089 Pfam Snf2-ATP coupling, chromatin remodelling complex 903 963 IPR029295 GO:0042393
Amo19g4301 1089 SMART SnAC_2 901 963 IPR029295 GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4301 Amo-Chr19 159725584 159733479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4301 691 836 RAD5 or RAD16-like Gene Family AT5G43530 37.333 2.93e-21 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Amo19g4301 SNF2_N 4.4e-69 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4301 - - gmx:100786280 1823.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g4301 19 159725584 159733479 Amo19g4301 19 159725584 159733479 ECH