Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4298 ATGCCGCTGTTTCTCACTCTTCTCCTCCTTATGCTGTTGCTTCTTCTCCTCTCCATTCTCTTCTTCGTCTTCAAGCCATGGCGCTTTTTTCTCCCTCTTTCCTCCTCCTCTTCCCCCTCCTCCTCCACCTCCATCAAGGCTAGTGAGCTGGAGAGGCCTCTTCTTTCAGCTGATGACATTCAGGTTTCACATAATCAGACCAATGAATTTCCCTTAGATTATGATCCTGAAGGTGCTTGCTCTCCCAACCAACTTCATTTTCGCRTCCCACAARACGATTCACTTGTTCAAAAGCAAATTTCTCTTCCCTCTAATGTGCCTCTAGGTGATAGCTTGGTTTTAGATGTAATTCATGATCATTTGGAAGATGTTGATGCTACTGGTCAAACACTTGTATTTCCCCCAGCTCAATTTGTTGAAACTCCAAAGCATAGAAGATCAAACTTTGAAAGTGACAGACTGAAAGACTTTGTGCAAGGAGATATCTCTGATCAAAGAAGTTGCCTCACGCTGGAGGTTAATGATGGTCCTTCTCGTGGACTTCGTTGTTCTGTACAGTCRACAAATACCTCTCGTCTACCACTAACCTTGGGAAGAGTTTCTCCAAGTGATTTGTTGCTAAATGATTCAGAAGTGTCAGGAAAGCATGCTCAAATAAACTGGAATGTGGATAAAATGAGGTGGGAATTGGTAGATATGGGTAGCTTAAATGGAACACAGTTAAATTCTCAGCCAATCAACAATGCAAAGACTGGAAGCAGGCATTGGAGTGATCCGGTGGATCTTGCTAATGGAGATATCATAACTCTTGGAACAACATCAAAAGCAATTGTTCATATTACTAAGCAAAATCAGCAGCATATTCCCTTTGGGGTGGGTATGGCATCAGATCCAATGGCTTTGCGTCGAGGAGGCAAAAAGCTGCCTATGCAGGATGTTTGCTATTATGAATGGCCTCTGCCTGGGTTGGATCAGTTTGGAGTGTTTGGCATTTGCGATGGGCATGGTGGAGATGGGGCTGCCAAATCTGCTAGCAGACTTTTTCCTGAGATAATTGGCAATTTATTATCAAATTCATTAGCACGAGAGAGGGTTTTGTCACTTCGTGATGCTTCAGAAATTCTTCGAGATGCGTTTGCTCAAACAGAAGCAGGCATGAATCACGATTGTGAGGGATGCACAGCAACAGTGCTTCTGGTGTGGGTTGACGGTGATAAAAATCTTTTTGCACAATGTGCGAATGTTGGAGACTCCACCTGTATCTTATGTGTTGATGGCAAACACATTAAGATGACAGAAGATCATAAGGTAGCTAATCATTCGGAAAGACTTCGAATTGAAGAGACAGGAGATCCATTGAAAAATGGGGAGAAACGTCTACATGGTATGAATCTTGCGAGGATGCTTGGGGACAAGTTCCTGAAACAGCAGGATTCACGGTTTAGTTCAGAGCCTTATATAAGTCAAGTCATGCATATTGATAAAGCATGCAGACCATTCGCCATTCTTGCTAGTGACGGGTTATGGGATGTGATCAGCATGAAGAAGGCAACTGAACTAGTTCTTCAGATGAGGGAGAGATATGCAACGGATAGAGAGAAATTTGCAGAAAGAATTGCAAATTCCTTGTTGAATGAGGCTAAAACACAAAGAACAAAGGATAATACCTGTGTAATTTTCTTAGATTTTGATACTTGTAGAGTTGAATCATAG 1713 0.4227 MPLFLTLLLLMLLLLLLSILFFVFKPWRFFLPLSSSSSPSSSTSIKASELERPLLSADDIQVSHNQTNEFPLDYDPEGACSPNQLHFRXPQXDSLVQKQISLPSNVPLGDSLVLDVIHDHLEDVDATGQTLVFPPAQFVETPKHRRSNFESDRLKDFVQGDISDQRSCLTLEVNDGPSRGLRCSVQSTNTSRLPLTLGRVSPSDLLLNDSEVSGKHAQINWNVDKMRWELVDMGSLNGTQLNSQPINNAKTGSRHWSDPVDLANGDIITLGTTSKAIVHITKQNQQHIPFGVGMASDPMALRRGGKKLPMQDVCYYEWPLPGLDQFGVFGICDGHGGDGAAKSASRLFPEIIGNLLSNSLARERVLSLRDASEILRDAFAQTEAGMNHDCEGCTATVLLVWVDGDKNLFAQCANVGDSTCILCVDGKHIKMTEDHKVANHSERLRIEETGDPLKNGEKRLHGMNLARMLGDKFLKQQDSRFSSEPYISQVMHIDKACRPFAILASDGLWDVISMKKATELVLQMRERYATDREKFAERIANSLLNEAKTQRTKDNTCVIFLDFDTCRVES* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4298 570 Gene3D - 163 298 - -
Amo19g4298 570 Pfam Protein phosphatase 2C 302 556 IPR001932 -
Amo19g4298 570 CDD PP2Cc 303 563 IPR001932 -
Amo19g4298 570 SUPERFAMILY SMAD/FHA domain 167 277 IPR008984 GO:0005515
Amo19g4298 570 ProSiteProfiles PPM-type phosphatase domain profile. 291 563 IPR001932 -
Amo19g4298 570 SUPERFAMILY PP2C-like 304 564 IPR036457 -
Amo19g4298 570 ProSiteProfiles Forkhead-associated (FHA) domain profile. 195 246 IPR000253 GO:0005515
Amo19g4298 570 Pfam FHA domain 196 271 IPR000253 GO:0005515
Amo19g4298 570 ProSitePatterns PPM-type phosphatase domain signature. 328 336 IPR000222 GO:0043169
Amo19g4298 570 Gene3D - 299 568 IPR036457 -
Amo19g4298 570 SMART FHA_2 194 246 IPR000253 GO:0005515
Amo19g4298 570 CDD FHA 169 274 IPR000253 GO:0005515
Amo19g4298 570 PANTHER PROTEIN PHOSPHATASE 2C 70 35 567 - -
Amo19g4298 570 SMART PP2C_4 285 561 IPR001932 -
Amo19g4298 570 PANTHER PROTEIN PHOSPHATASE 2C 35 567 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4298 Amo-Chr19 159704377 159708234 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4298 22 565 PP2C-type Phosphatase Gene Family AT5G19280 54.035 0.0 576
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4298 K01090 - gmx:100170642 766.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g4298 19 159704377 159708234 Amo19g4298 19 159704377 159708234 ECH