Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4287 ATGTACTCTGAAAATCTGATAGTGTCCGCTGAAAACCCTAGACCCTTCGCGTTTCAGCAACATCTATCTTCTTCTTCGTCTACTACTACTTCGGCCAACGCGAAACCCATGAGCAATGAGATCGCACAGAAGCCTCCCCCTTCCATTCTCGTTGGCAGGTTCAAGGCTATGCTCAAGCAGCGCGACGACGAGCTCAGAGCCACCGCCGGTCACGTGCCGCCTCCGTCTACGGAAGAAATCGTTCAGCTGTACGAGATGCTGCTGTCGGAGCTCACGTGCAATCTGAAGGCCATTATCAACGATCTCACCTTCATCGCTGAGCAGCAGAGGGAGCATGCCAGGGGCATCGCCGACGCTATCTGCGCTCGGATTCTSGAGGTGCCTGCAGAGCAAAAGCTTCCTTCACTCTATCTTTTGGACAGTATAGTGAAGAACTTTGGACAGGAATATGTTAGATACTTTGCATTACGCCTGCCCGAAGTTTTCTGTGAGGCATACAGGCAGGTTCAGCCTCATTTGCACCCTGCTATGCGCCATCTCTTTGGCACCTGGTCAAAAGTCTTTCCACCGTCTGTCCTACGCAAGATTGAAGCTGAGTTGCAACTTTCTCAAGTAGTTAATAATAGTCAATCGTCCAACATGAATCCCCTCAGAGCATCTGAATCTCCTAGACCAAGTCATGGCATACATGTAAATCCAAAGTACCTGCGGCAGTTGGAGCGCTCAACTGTGGATAGTGTTGGTGGTGAAAAGTTTGACATAGCAGGAAAGGCTAGTAATACAAATTTTGGCATTGTAGCTAATAAGACGAATCAATTTGTATCTAGCAGACTTGGAATATCCTCTTCTCCTTCAAGAATTGGTCTAGATAGGCCTTTGTCAGTAGCAGATGAGTATGCAGTTGACAGTTCTTCTGGAAGGATGGTTGAGAGAGAGTCTCCTCATAATTATGGAGTACCAAGAGTAGTAGGTAGAGAGGAAGAATTGGGTGAATGGCAGCGAAAGCAGTACCCTGGTGATGTTCGAAATCGATTTCAAACTCCTTTGACATACAGCCTTAGTAATGGACATCCGCGTCAAAGTCCAAGAGCTTTAATTGATGCGTATGGCAGTGACAAAAGCCAAGAAACTTCAAGCACCAAGCCTCTTATACTTGATCGGCTAGATAGAAATGGTATCGACAACAAAGTGACATCATGGCAGAATACTGAAGAGGAGGAGTTTGATTGGGAAGATATGAGTCCAACATTAGTAGACCATAGTAGGAATAATGGCTTCTTGCAATCAACTGCTTTTTCCAGGGATAAGCCTGTTGCAGTAGCAGCTAATGCAATTTTGTCAGAGCAAGATACAAGGAAGGGTTGGTCTGGTGGGTCTCAGCTTCCTCCAGTAGATGATTCTTCTGTCATAGCAGCAGATGCATTTCCCCATTCAGTTTATGGTCGTGTATCCATGGGGCAGGTATCTGGTTTCCAAAATCAAATAAATCAGAGTCTGGGTTCCCGTCCACCTCATGATGCTTGGAAGGTTTCTCAATCACAAACCATGCTTAATATTAGGGGCCGAGGAAGAACTCTTTTGATGCCTCCTATTGATAACAATCCCAATAATGATGTAAACCCCTATGGGATTCGACCTGCAGTGTCAAGGATGGTTTCTGGTATTGCCTCTAACGTAGAGCCTCGTCCACCAGTTTTGCCTGGATCTTTTGAAATAAGACCTTCTGTAACTGTGCATGGCACTCGTCCTCCCACCTTAAATCCAATATTTCCACCGCAAAAACATGTTAGAAGTCAATTTGATGCAATAAATACCAGTAATCCCATTATGAATCATGGCCCAAATAAATCTCTGTTCATGCCTGAACAGCCAGGGCTGGACARTGTTGAAAACAGGGATGCCAGTAAAGGAAAGATACATCAGTTGCCTAATCAGCTGGCTGGATTGCTTCCATCCAACCTGCAAAACCTTGGACAAACACCACAACATTTTTTCCCATCTCGGGATCCATCATCCTCACAATTTGGTCATGGYAACTCTCTGCAAGGYCATGGTCCTTCTTTAAGRGCAGCTATGTCAAATCCATTACCTATTACACAGTTTCCTTTACCAGTCCAAGGTATTGCAAATAATTCCTTACAATTACAGGGGGGAGTCCATCCACCTTTACCTCCAGGTCGCCCTCCTGCTCCTTCTCAAATGATACCACATCCAAARGCTGGTCCATATGTATCAAACCAACAGCCGGCTGTTGCATATACTAATTTAATTAGTTCGCTTATGTCCCAAGGCGTAATCTCATTGGCTAATCAACCCTCTGGACAGGATTCTGTTGGAACTGAGTTTAATCCAGATATTCTGAAGATTCGTRATGAGTCTGCAATCAGTGCCTTGTATGGAGATCTCCCTAGACAATGCACGACTTGTGGACTAAGATTCAAATGCCAAGAGGAGCACAGTAGTCATATGGATTGGCATGTAACAAAGAACAGGATGTCCAAAAGTCGCAAACAGAAGCCTTCTCGTAAGTGGTTTGTGAGTGACAGGATGTGGCTTAGTGGTGCGGAGGCACTGGGAACAGAATCGGTTCCMGGTTTTCTGCCAACRGAGACCGTAGAAGAAAAAAAAGATGATGAAGAGTTGGCAGTGCCAGCTGAAGAGGACCAGAATACATGTGCATTATGTGGTGAGCCTTTCGATGAGTTTTACAGTGACGAAATGGAGGAATGGATGTATAGAGGAGCTMTATACCTCAATGCACCCACCGGAGCAACAGTGGGCATGGACAGGTCGCAGTTAGGTCCCATTATTCATGCCAAATGCAGATCAGACACTAATACGTCCCCCTCTGAAGATTTCGGGTTGGATGAAGGGGGTGCCAATGAAGAGGGCAGCCAAAGAAAACGAATGCGGAGTTGA 2919 0.455 MYSENLIVSAENPRPFAFQQHLSSSSSTTTSANAKPMSNEIAQKPPPSILVGRFKAMLKQRDDELRATAGHVPPPSTEEIVQLYEMLLSELTCNLKAIINDLTFIAEQQREHARGIADAICARILEVPAEQKLPSLYLLDSIVKNFGQEYVRYFALRLPEVFCEAYRQVQPHLHPAMRHLFGTWSKVFPPSVLRKIEAELQLSQVVNNSQSSNMNPLRASESPRPSHGIHVNPKYLRQLERSTVDSVGGEKFDIAGKASNTNFGIVANKTNQFVSSRLGISSSPSRIGLDRPLSVADEYAVDSSSGRMVERESPHNYGVPRVVGREEELGEWQRKQYPGDVRNRFQTPLTYSLSNGHPRQSPRALIDAYGSDKSQETSSTKPLILDRLDRNGIDNKVTSWQNTEEEEFDWEDMSPTLVDHSRNNGFLQSTAFSRDKPVAVAANAILSEQDTRKGWSGGSQLPPVDDSSVIAADAFPHSVYGRVSMGQVSGFQNQINQSLGSRPPHDAWKVSQSQTMLNIRGRGRTLLMPPIDNNPNNDVNPYGIRPAVSRMVSGIASNVEPRPPVLPGSFEIRPSVTVHGTRPPTLNPIFPPQKHVRSQFDAINTSNPIMNHGPNKSLFMPEQPGLDXVENRDASKGKIHQLPNQLAGLLPSNLQNLGQTPQHFFPSRDPSSSQFGHGNSLQGHGPSLRAAMSNPLPITQFPLPVQGIANNSLQLQGGVHPPLPPGRPPAPSQMIPHPKAGPYVSNQQPAVAYTNLISSLMSQGVISLANQPSGQDSVGTEFNPDILKIRXESAISALYGDLPRQCTTCGLRFKCQEEHSSHMDWHVTKNRMSKSRKQKPSRKWFVSDRMWLSGAEALGTESVPGFLPTETVEEKKDDEELAVPAEEDQNTCALCGEPFDEFYSDEMEEWMYRGAXYLNAPTGATVGMDRSQLGPIIHAKCRSDTNTSPSEDFGLDEGGANEEGSQRKRMRS* 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4287 972 Pfam CID domain 93 195 IPR006569 -
Amo19g4287 972 SUPERFAMILY ENTH/VHS domain 75 200 IPR008942 -
Amo19g4287 972 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 44 947 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Amo19g4287 972 ProSiteProfiles CID domain profile. 76 204 IPR006569 -
Amo19g4287 972 MobiDBLite consensus disorder prediction 721 736 - -
Amo19g4287 972 MobiDBLite consensus disorder prediction 651 681 - -
Amo19g4287 972 MobiDBLite consensus disorder prediction 604 630 - -
Amo19g4287 972 SMART 558neu5 79 201 IPR006569 -
Amo19g4287 972 MobiDBLite consensus disorder prediction 211 230 - -
Amo19g4287 972 MobiDBLite consensus disorder prediction 21 38 - -
Amo19g4287 972 ProSitePatterns Zinc finger C2H2 type domain signature. 806 826 IPR013087 -
Amo19g4287 972 MobiDBLite consensus disorder prediction 651 693 - -
Amo19g4287 972 MobiDBLite consensus disorder prediction 939 972 - -
Amo19g4287 972 MobiDBLite consensus disorder prediction 713 743 - -
Amo19g4287 972 MobiDBLite consensus disorder prediction 21 42 - -
Amo19g4287 972 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 44 947 - -
Amo19g4287 972 Gene3D - 74 202 IPR008942 -
Amo19g4287 972 CDD CID_Pcf11 81 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4287 Amo-Chr19 159566123 159571900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4287 744 972 C2H2 Transcription Factor Family AT4G04885 71.179 3.31e-108 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4287 K14400 - gmx:100794796 1362.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g4287 19 159566123 159571900 Amo19g4287 19 159566123 159571900 ECH