Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4286 ATGTCAAACCATTCCATGATGAACAACAATTCCTCAGGTAGTGATTATTTTCTAAGAAAAATTCTAGAGATACAAGATTTTGAGGTTGACACTGACAGCCACGCCAACATGCAACAACCTCCTCCTGGCTATGGCAGCGATCACCCCAAGAAGAAGCGCTACCAGCGCCACACGCCGTATCAGATACAAGAGATGGAAACGTTCTTCAAGGCGTGCCCTCACCCAGATGAGCAGCAAAGGATAGAGCTGGGTAATGTTTTGGGATTAGACCATTTGCAAATCAAGTTTTGGTTCCAGAACAAGCGAACCCAACTCAAGAATCAATATGAACGCAACGAGAACTTTGCACTGAAGAATGAGAATGAGGAGCTTCGAGCTGAGAACGAGAACTACAAGGAGATCCTAAATAGTATAAGATGTCATGGCTGCGGAGGCCCACCTCCTCCTCCATTGACCTATGACCAGATGAGGCAGGAGAATAACAAGCTAAGAGAACAGATTGAGTGGATGTCAACAATGATGTCTAACTGTGTTCTACAAGAGCCAGATAATACTTCCAAACCCAACATCACCAGGCCTCAGAATGTGCCTAATATAGAATCATCTCAGCAAAACAACACCAACAACATGATGCCTCAGACTCAGAGTGTGCCTAATCAAGAACTTGGTAACATGGCATCACCACCTCAGAGCAATAACATTGACATGCTGTCTCCAAGTATGTTTAATCAAGGAATTATTGACAGCATGCGATTGACTCAGCAGAACAATGGCATTGACATGCCTCAGAATGTGATTAATCATGGAATTGTCAAAGACATGCCATCATCTCAGGCTCACAACAATGTTATTAACATGACTCCGCCTATGAGTATGTTAAATCAGGGAATTGGTGATAACATTGCCGTTATTCCTCCTAGTGTGCTTGATCAAGGAAATTGTAGCGTGCCATCATCATCTCAACACAACAACGAAATTTACATTAACCTGCCTTTGAGTTCGCTTAATCAAGATGTTGGTAGCTATGGAGCAAAGTCAAACGACAAAGCAAGGGAAACGAGTAGTGGTAGTGACCCTCTAATTAGGTCACTCCCAGTTTCTAACAAAGCCATGATCGAGGAGCTTGCAGCTGCGTCACTGGAGGAACTCAAAGCCTTGGTTCAAGCAGGGGAGCCCATGTGGGTCAGTGGGGCCCACAACTCTGAAACTATCAACGAACAAGAATACTATAGGACTTTCCCTGGTGGAATTGGTCCAAGACTCTTGGGGTATAAATCTGAATCTTCAAGGGAATCCAGGGTCATCAACATGAATCACGTTAACCTCGTTGAGATCCTTAATGATGTGGATCTATGGTCACGTGTGTTTTGCAGCATTGTTTCAAAAGCAGCAGGATTTCAAGTCCTATCAACTGGACAGGCAGGAAGTTATGATGGAAACTTGCAAGTGGTGTCATCAGAGTTCCAAATGCCAACACCACTTGTTCCTGCTCGCGAGTACTATTTCCTAAGGTACTGCAAGAAGCTCCAAGATGGGAGATGGGTGGTGGTCGATGCTTCCCTGGAAACTTCACAACCAAATGCAACAATCCCTCCGACYCGAAGAAGGCCCTCTGGTTGCCTGATTCAGGCATCTCCAGATGGTTACTCAACAAAGGTTACCTGGGTTGAACATGTAGAAGTGGAYGACAGRGCACTAATGGTGAATAGTATGTATAAGCCTCTAGTTGAATCTGGCTTAGCCTTTGGAGCTAGACGCTGGGTCGCACAATTAGATAGAAGATGCGAACGTATTGCWAGTGCAGTACAAWCCACCACCATACTGCAACMACAAGAAGACCAACTTAGTGTGACGAGTGTTGAGGGCAAAAAGGGGTTGGTGAAGCTGGCAGAGAGAATGGTTATGGACTTTTTAAGTGGTGTTGGTGCTTCAACAGTAGAAAATTGGGCAATCGTAACTCCATCAACAAATCACAGCAATATAAGAATCATAACCAGAAAGGTTGAGGACGATCCAGGTAGACCTTCCGGTATAGTTATCGGTGCCGCAACTTGTTTCCACCTCGCAGTTCCTCCAAACAGCTTCTTTGATAGGGTTCGAACTGCAAACGCAAGAGCAGAGTGGGATGTTCTCTGTACCGGAGGTGTTGCTGAGGAATTTGCACACATAAAAAATGGTCGCGACCCTGGGAACTGTATCACATTATTCCGTATYAAGAGTCCAGATGCGAAGAACAACGGGATGATAATAGTTCAAGAGAGTAGCAGCGATTCAACAGGGTCATTTGTGATATACGCACCGGTTGATATGAATTCGATCAATGCAGTGATTGGAGGGAGAGATCCCGATGAACTTCCGATTTTGCCCTCGGGAATGGCGATTCTTCCAGATGGAGGTGGAGGTTGTTTGGTGACGTTGGCATTCCAGATATTGATCGAGTCAGATCCAACAAAGAAGATATCGATCTGTTCAGTGAGCACTATTAACCAGTTGGTTAAGGTTACGGTTAACAACATCAAAGCTCTATTCAAGACTGAGGAGGAACCTAACGAGAGAATCTAA 2562 0.4461 MSNHSMMNNNSSGSDYFLRKILEIQDFEVDTDSHANMQQPPPGYGSDHPKKKRYQRHTPYQIQEMETFFKACPHPDEQQRIELGNVLGLDHLQIKFWFQNKRTQLKNQYERNENFALKNENEELRAENENYKEILNSIRCHGCGGPPPPPLTYDQMRQENNKLREQIEWMSTMMSNCVLQEPDNTSKPNITRPQNVPNIESSQQNNTNNMMPQTQSVPNQELGNMASPPQSNNIDMLSPSMFNQGIIDSMRLTQQNNGIDMPQNVINHGIVKDMPSSQAHNNVINMTPPMSMLNQGIGDNIAVIPPSVLDQGNCSVPSSSQHNNEIYINLPLSSLNQDVGSYGAKSNDKARETSSGSDPLIRSLPVSNKAMIEELAAASLEELKALVQAGEPMWVSGAHNSETINEQEYYRTFPGGIGPRLLGYKSESSRESRVINMNHVNLVEILNDVDLWSRVFCSIVSKAAGFQVLSTGQAGSYDGNLQVVSSEFQMPTPLVPAREYYFLRYCKKLQDGRWVVVDASLETSQPNATIPPTRRRPSGCLIQASPDGYSTKVTWVEHVEVDDRALMVNSMYKPLVESGLAFGARRWVAQLDRRCERIASAVQXTTILQXQEDQLSVTSVEGKKGLVKLAERMVMDFLSGVGASTVENWAIVTPSTNHSNIRIITRKVEDDPGRPSGIVIGAATCFHLAVPPNSFFDRVRTANARAEWDVLCTGGVAEEFAHIKNGRDPGNCITLFRIKSPDAKNNGMIIVQESSSDSTGSFVIYAPVDMNSINAVIGGRDPDELPILPSGMAILPDGGGGCLVTLAFQILIESDPTKKISICSVSTINQLVKVTVNNIKALFKTEEEPNERI* 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4286 853 Pfam Homeodomain 51 106 IPR001356 GO:0003677
Amo19g4286 853 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 361 842 - -
Amo19g4286 853 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 21 200 - -
Amo19g4286 853 ProSiteProfiles START domain profile. 365 600 IPR002913 GO:0008289
Amo19g4286 853 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 361 842 IPR042160 -
Amo19g4286 853 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 21 200 IPR042160 -
Amo19g4286 853 CDD START_ArGLABRA2_like 369 596 - -
Amo19g4286 853 SUPERFAMILY Bet v1-like 622 813 - -
Amo19g4286 853 MobiDBLite consensus disorder prediction 179 239 - -
Amo19g4286 853 SMART START_1 374 597 IPR002913 GO:0008289
Amo19g4286 853 SUPERFAMILY Bet v1-like 369 599 - -
Amo19g4286 853 CDD homeodomain 51 108 IPR001356 GO:0003677
Amo19g4286 853 Gene3D - 38 123 - -
Amo19g4286 853 MobiDBLite consensus disorder prediction 339 360 - -
Amo19g4286 853 Coils Coil 107 141 - -
Amo19g4286 853 MobiDBLite consensus disorder prediction 29 55 - -
Amo19g4286 853 ProSiteProfiles 'Homeobox' domain profile. 48 108 IPR001356 GO:0003677
Amo19g4286 853 SMART HOX_1 50 112 IPR001356 GO:0003677
Amo19g4286 853 Coils Coil 153 173 - -
Amo19g4286 853 Gene3D - 433 591 IPR023393 -
Amo19g4286 853 SUPERFAMILY Homeodomain-like 45 110 IPR009057 -
Amo19g4286 853 Pfam START domain 375 597 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4286 Amo-Chr19 159558230 159561655 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4286 326 841 Homeobox Transcription Factor Family AT4G04890 51.111 0.0 556
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Amo19g4286 START 5.4e-42 CL0209