Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4284 ATGCAGGGCGAACTAGAAGAATTTACAAGCCCCAACAAAAGTGCCTCTAGAAAGATGCAAACACCGGATGCTGGAACAGAACAATGTCATTTGTCAGAGAAAACATCTCAGGTGGGTTCCGAATGTTTAGACAACAAGCAAGGTGTGCCTGGCAATGTGTTAGGCAGTTCTCTTATTGATGACCAAGCTTCTGAGAAAATGGCCAAGAGTTCTGAGTGTTTGGACAACAAGCAGAGCATGCCTAGTGATGTGTTAACAAGCTCCATGATTGATGAAAACTCAAACCGTGTGGCCGAGAATTCTGAGCTTTTGGACGACAAGCAAAGCATGCATAGTGATGTGTTAACCGKTTCCGTGATTGATGAAAAATCAAACCAAGTTTCTGAAAAAATGACTGATGGTACGCAGMGTTTGGGCAACAAGAAAAACTTGCAAGGTGAAGTGTTAACCAATTGTGTAYTTGATGAAAAATCAAATGAGGTCTCTGAAAAASTGATCGAGGGTCCTGAGCATTTGGCCAGCAGGCAAAGCATGCATAGCGATGATGCATTGACCAATTCTGTGATTGATGAAAAATCAAACCAAGTTTCTGATAAAATGTTTGAGTGTCTTGAGCATTTGGCCAACAAGCAAAGCATGCATGGTGCTGTGTTAACCAAATCTGTGATTGATGAAAAGTTAAATCAAGTTTCTGACAAAATGACTGAGAGTCCAGAGTGTTTGGACAACAGGCAAAGCCTGCATGGTGATGTGCTAACCAATTCTGTGATTGATGAAAAAACAAACCAAGTATATGAAAAAATGACTGAGAGTCCTGAGCGTTTGGACAAGAAGCAAGGCATGCATGGCGATGTGTTAATCAATTCTGTGATTCGTGAAAACTCAAACCATGTTTCTCGCAAAATGACCGAGAGTTCTCAGTGTTTGGACAACAAGCAAAGTGTAATTGACGAGGTGTTAACCAGTCATGTGATTGATGAAAAATCGAACCAAGTTTCAGACAAAATGACAGAGAGTTCTCAGTGTTTACACAATGCACAAAGCATGCCAAGCAATGTGTTAACCAGCTCTGTTATTGATGAAAACTCAAACCAAGTTTCTGGAAAAATTATTAGGGGTGCTGTTATTGCACTGCCTGCACAACGCCAGCGTGATTTGAAAAAGAGTTGTCAAACTGCAGAAGGTTCATGCTCTCAACGGAGTACCTCAGAACAAGACCCCTCTCATTTGTCTAATGACAAATCAGAGATCAAATGTCAGCCTTTTTCTCAGAATGGCCAAAATGTGTCCGTGGAAATAAATAATCCTGTAACTGGTTCTCTTGTTGAGAACCAAACGCTATCTGTTCCAACACAAGTGAACACCACTTCTGCAAATGGACTACAGGATCCAGCTCCAGCATCTGTAGATGTGAAAAATACTGGTTTGAATTGTTCAAAAAGAAAATCTACAGCCACAACATCTATGCAGTTGAGCTGCAAGGGTAAAAAAAGCTCAAAATTATTAAAGAAGAAGTATATGCTAAGGTCATTAGGAAGCAGTGATAGAGCTTTGCGATCAAGGACACGCGAAAAACCTAAACCACCTGAGTCAAATAGCAATTTGGTTGATGCTAATAATGATGGCGTGAAGAATAAAAGGGGGAAGAAGAAGAACAAAAAGAGAGACGGGGAAGGAGTTATTGATGAATTTTCTAGAATAAGAGCTCGCTTAAGATATTTATTGAAACGAGTTAGCTATGAGCAGAACTTGATTGATGCTTATTCTAGTGAGGGCTGGAAAGGATACAGTTTGGAAAAGTTAAAGCCTGAAAAGGAGCTTCAACGGGCTAAGACTGAAATACTTCGACGTAAATTGAAAATGAGGGATCTCTTTCGATATTTGGATTCATTGTGTGCTGAAGGAAGGCTTCCTGAATCTGTGTTTGATTCTGAAGGAGAGATTGACAGTGAGGATATATTCTGTGCAAAATGTAGTTCCAAAGAGTTGAGCACAAACAATGATATAATTCTCTGTGACGGTGCTTGTGAACGTGGATTTCACCAGCTTTGTGTGGATCCTCCTTTGTTAACTGAAAACAGTAATCTCTTGTTTACTGCATTGATTGGTCACTTTGTACTTCCAAGTTGTCTATCATTTATTTATTTGCTGTGGCTTACAGTTCCACCTGGCGATGAGGGTTGGCTATGCCCGGGATGTGATTGCAAAGATGACTGTATTGAAKTTGTTAATGACTCCTTAGGAACACGTCTCTCTCTTGAGGATAGCTGGGAGAGGGTTTTTCCAGAAGCAGCTGCAGTTGATGCATTCAATGTGGATCACAACTCAGGACTTCCTTCTGATGATTCTGATGATGATGATTATGATCCTGATGTTAAAGAAGATGTGGAGGCTGAAGGGGGTGAATCAAGTTCTGATGAATCTGAGTATGCTTCTGCTTCTGAGAAATTGGAGGATTCAGGCCATGAGGATCAGTACATGGGCCTTCCTTCTGAAGATTCTGAGGATGATGATTATAATCCTGATGCTCCAGATCAAGACATGAAAGTTGCAGAGGAAAGTTCGAGCTCTGATTTCACATCTGATTCTGAGGATCTTGCTGCTACAATTAATGATAATATGCCCCCAGGACACGGTGAAGATATCACATCTGCATCATTGGATGATGCAAAGAAGTTTAAAGGATCCAGCAAAACAAGTAAAGTCGGTAAGAAGCCATCTATAACTGATGAATTGTCATCTTTACTAGAGGCAGATCCTGGCCAAGAGAGTTACACTCCTGTTTCGGGGAAAAGAAATGTGGAAAGGTTGGACTACAAAAAGCTGTATGATGTAAGTTCCGGGGAGAAAAAACCAAGATCTTCAACATACAACAGACTTGGAGATGTTGCAATTGAGAGACTTTACAAATCTTTCAAAGAGAATCAGTATCCAGATCGGACCACAAAAGAAAGCTTGGCACAAGAAACAGGACTCACACTTCAGCAGGTAAGTAAATGGTTTGACAACACCCGATGGAGCTTTAGGCATTCATCCCATAAGGAACCCAGGACAGGTGAAAATGCTTTGGCGCAGACCACTGATAACATATCTGAAAATGAGGTGGCACCTGGTGGAGAGAACAGGGACAGTGAATTATTCCCCCAAGATGTCACCGGAGAAAACTCAAAAACCCCAAGCTCTAAGAAGAGGAAGGGTATGTCTGAACCCCTGGCATCTGAGTCTCCTCAGAATGCTGATAAAGCATCAAGTCATAAAATGAAGACAAGGAAAAGAAAATGA 3282 0.4098 MQGELEEFTSPNKSASRKMQTPDAGTEQCHLSEKTSQVGSECLDNKQGVPGNVLGSSLIDDQASEKMAKSSECLDNKQSMPSDVLTSSMIDENSNRVAENSELLDDKQSMHSDVLTXSVIDEKSNQVSEKMTDGTQXLGNKKNLQGEVLTNCVXDEKSNEVSEKXIEGPEHLASRQSMHSDDALTNSVIDEKSNQVSDKMFECLEHLANKQSMHGAVLTKSVIDEKLNQVSDKMTESPECLDNRQSLHGDVLTNSVIDEKTNQVYEKMTESPERLDKKQGMHGDVLINSVIRENSNHVSRKMTESSQCLDNKQSVIDEVLTSHVIDEKSNQVSDKMTESSQCLHNAQSMPSNVLTSSVIDENSNQVSGKIIRGAVIALPAQRQRDLKKSCQTAEGSCSQRSTSEQDPSHLSNDKSEIKCQPFSQNGQNVSVEINNPVTGSLVENQTLSVPTQVNTTSANGLQDPAPASVDVKNTGLNCSKRKSTATTSMQLSCKGKKSSKLLKKKYMLRSLGSSDRALRSRTREKPKPPESNSNLVDANNDGVKNKRGKKKNKKRDGEGVIDEFSRIRARLRYLLKRVSYEQNLIDAYSSEGWKGYSLEKLKPEKELQRAKTEILRRKLKMRDLFRYLDSLCAEGRLPESVFDSEGEIDSEDIFCAKCSSKELSTNNDIILCDGACERGFHQLCVDPPLLTENSNLLFTALIGHFVLPSCLSFIYLLWLTVPPGDEGWLCPGCDCKDDCIEXVNDSLGTRLSLEDSWERVFPEAAAVDAFNVDHNSGLPSDDSDDDDYDPDVKEDVEAEGGESSSDESEYASASEKLEDSGHEDQYMGLPSEDSEDDDYNPDAPDQDMKVAEESSSSDFTSDSEDLAATINDNMPPGHGEDITSASLDDAKKFKGSSKTSKVGKKPSITDELSSLLEADPGQESYTPVSGKRNVERLDYKKLYDVSSGEKKPRSSTYNRLGDVAIERLYKSFKENQYPDRTTKESLAQETGLTLQQVSKWFDNTRWSFRHSSHKEPRTGENALAQTTDNISENEVAPGGENRDSELFPQDVTGENSKTPSSKKRKGMSEPLASESPQNADKASSHKMKTRKRK* 1094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4284 1093 CDD homeodomain 950 1012 IPR001356 GO:0003677
Amo19g4284 1093 ProSiteProfiles Zinc finger PHD-type profile. 652 736 IPR019787 -
Amo19g4284 1093 SMART PHD_3 654 734 IPR001965 -
Amo19g4284 1093 MobiDBLite consensus disorder prediction 512 554 - -
Amo19g4284 1093 ProSiteProfiles 'Homeobox' domain profile. 951 1011 IPR001356 GO:0003677
Amo19g4284 1093 MobiDBLite consensus disorder prediction 1 43 - -
Amo19g4284 1093 MobiDBLite consensus disorder prediction 780 804 - -
Amo19g4284 1093 SUPERFAMILY FYVE/PHD zinc finger 644 690 IPR011011 -
Amo19g4284 1093 MobiDBLite consensus disorder prediction 1018 1034 - -
Amo19g4284 1093 MobiDBLite consensus disorder prediction 1 110 - -
Amo19g4284 1093 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 430 955 - -
Amo19g4284 1093 MobiDBLite consensus disorder prediction 397 475 - -
Amo19g4284 1093 SMART HOX_1 949 1015 IPR001356 GO:0003677
Amo19g4284 1093 ProSitePatterns Zinc finger PHD-type signature. 655 733 IPR019786 -
Amo19g4284 1093 Gene3D - 954 1022 - -
Amo19g4284 1093 MobiDBLite consensus disorder prediction 73 97 - -
Amo19g4284 1093 MobiDBLite consensus disorder prediction 772 906 - -
Amo19g4284 1093 PANTHER HOMEOBOX PROTEIN HAT3.1 430 955 - -
Amo19g4284 1093 PANTHER HOMEOBOX PROTEIN HAT3.1 949 1065 - -
Amo19g4284 1093 MobiDBLite consensus disorder prediction 853 868 - -
Amo19g4284 1093 Pfam Homeodomain 964 1007 IPR001356 GO:0003677
Amo19g4284 1093 MobiDBLite consensus disorder prediction 911 930 - -
Amo19g4284 1093 MobiDBLite consensus disorder prediction 809 829 - -
Amo19g4284 1093 MobiDBLite consensus disorder prediction 414 463 - -
Amo19g4284 1093 MobiDBLite consensus disorder prediction 1005 1093 - -
Amo19g4284 1093 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 949 1065 - -
Amo19g4284 1093 MobiDBLite consensus disorder prediction 516 530 - -
Amo19g4284 1093 CDD PHD_PRHA_like 654 733 IPR045876 -
Amo19g4284 1093 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 647 697 IPR013083 -
Amo19g4284 1093 SUPERFAMILY Homeodomain-like 950 1013 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4284 Amo-Chr19 159535543 159541964 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4284 458 1008 Homeobox Transcription Factor Family AT3G19510 40.804 1.36e-107 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Amo19g4284 Homeodomain 9e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4284 - - aip:107617775 1684.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g4284 19 159535543 159541964 Amo19g4284 19 159535543 159541964 ECH