Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4275 ATGCTACGATTATGCTATAGCCCTTTCGATTGTTGCTTCCGGCGACGCGTCGGCGGCTCTGATAGCCTTCTCTGGCACACTGACCTCAAGCCTCACTTCTCCGGTGACTTCTCCATCGCCGTCGCTCAGGCCAATAACAGCCTCGAAGATCAGAGCCAAGTCTTTACCTCCCCCTCCGCCACCTACATAGGCGTCTACGACGGCCACGGCGGCCCCGAGGCTTCCAGATTCGTCAACAAGCGTCTCTTACCCTATTTGCACAAATTCGTCTCTGAACAAGGGGGATTGTCAGTGGATGTCATAAAGAAGGCGTTCAGTGCGACGGAGGAGGAGTTCTTGCATTTGGTGAAGCTGTCTTTACCAGTTAGTCCCCAGATTGCTTCAGTGGGATCATGCTGCCTTCTTGGCGCAATTTCTAATAATGTGTTGTATGTCGCTAACCTTGGAGACTCGAGAGCTGTTCTTGGCCGGAGGGATACAGAGAGCAAGAATTCTCCTGTGGTGGCACTGCGGTTGTCCACGGATCATAATGTAGCTGATGAAGAGGTGAGGCGAGAAGTTGAAGCCCTCCACCCTGATGATTCACATATTGTGGTCTATACTCGTGGAGTTTGGAGGATTAAGGGCATTATACAGGTGTCAAGATCAATTGGTGATGTCTATTTAAAGAGACCTGATTTCTTCAGAGACCCAGTTTTTCAGCAATTTGCAACTCCTATTCCCTTGAAGCGTCCTGTAATGACGGCTGAACCATCGGTCATAATTAGGGAGCTTGAAACAGAAGATCTATTTTTGATATTTGCATCAGACGGCCTATGGGAACAATTAAGTGATGAAACAGCAGTTGAGATTGTTTTCAAATATCCAAGAGCTGGAATTGCCAAGAGACTAGTGAGAGCTGCACTTCAGGAAGCCGCAAAGAAGAGAGAGATGAGATATGATGACATAAAGAAAATTGACAAAGGAATCAGACGACACTTCCATGATGATATAACTGTCATTGTAATCTATCTTGATCACCATGACAGCTCCTCCTCTAATGGAAGGTTTAAGCAAAGTGCTGTTGGCTGCACAACTGCCCCTATTGATATTTTTTCCCTAAATGCGGATGAAGCAGAGAAGAGTATGCTTGGTGCGATGGCCTAA 1146 0.4695 MLRLCYSPFDCCFRRRVGGSDSLLWHTDLKPHFSGDFSIAVAQANNSLEDQSQVFTSPSATYIGVYDGHGGPEASRFVNKRLLPYLHKFVSEQGGLSVDVIKKAFSATEEEFLHLVKLSLPVSPQIASVGSCCLLGAISNNVLYVANLGDSRAVLGRRDTESKNSPVVALRLSTDHNVADEEVRREVEALHPDDSHIVVYTRGVWRIKGIIQVSRSIGDVYLKRPDFFRDPVFQQFATPIPLKRPVMTAEPSVIIRELETEDLFLIFASDGLWEQLSDETAVEIVFKYPRAGIAKRLVRAALQEAAKKREMRYDDIKKIDKGIRRHFHDDITVIVIYLDHHDSSSSNGRFKQSAVGCTTAPIDIFSLNADEAEKSMLGAMA* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4275 381 SMART PP2C_4 30 336 IPR001932 -
Amo19g4275 381 ProSitePatterns PPM-type phosphatase domain signature. 62 70 IPR000222 GO:0043169
Amo19g4275 381 CDD PP2Cc 41 338 IPR001932 -
Amo19g4275 381 PANTHER PROTEIN PHOSPHATASE 2C 63-RELATED 4 376 - -
Amo19g4275 381 PANTHER ALPHABET, ISOFORM E-RELATED 4 376 - -
Amo19g4275 381 ProSiteProfiles PPM-type phosphatase domain profile. 36 338 IPR001932 -
Amo19g4275 381 Pfam Protein phosphatase 2C 57 307 IPR001932 -
Amo19g4275 381 Gene3D - 30 347 IPR036457 -
Amo19g4275 381 SUPERFAMILY PP2C-like 43 340 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4275 Amo-Chr19 159442870 159444708 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4275 17 348 PP2C-type Phosphatase Gene Family AT3G51370 56.765 3.88e-144 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4275 - K01102 gmx:100812137 667.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g4275 19 159442870 159444708 Amo19g4275 19 159442870 159444708 ECH
Amo05g0630 05 7408419 7410871 Amo19g4275 19 159442870 159444708 PCT