Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4274 ATGACGAGCGCTTCGGAGCTATTCCACAGCAGGAGGCATCGTTTGGGACGATACAATAACAATCTAGGGCTTGACTCCGACCATGTTCCCGACCTCCACCATCCTCGCCGCCTTTCTCGCCGCCTCCCTCACTCTCCCTCTTCCTCCGAGCGTGCAGCAGCAGCTGATAGATTCGAGAGGAGGTATCGGCGGTCGCTGTTGAATGCGGAAAGCGTGAGAGATGCGTTTGCTCCTCCCTCCGATAGACTTCCTGTTGGTGTCTTACTTGCACGCGCCAGGCTCGTTGAGAGACTCAGAGGAGACCCTCTCTCGCCTAACAGGCACTCAATAGGCAGGGATCAAGAAAGTGATGATGTTGTTGTTTCTGACTTGACTTCTCAAATGGGAAGGTCCCATCTATTGCAAGAGAAACCACCTGGACTATCTCAGGAAGCCCTAGAGTCTTTACATGTTGAAGTTTTTAGCAGCAGGGATACAGGTGAGGATTGTAGCATATGCTTGGAATCTTTTGTGGATGGGGATCAGCTCATATGTTTGCCATGTCACCATAGATTTCACTCTGCTTGTTTGGATCCTTGGGTTCGCTGTTGCGGAGACTGTCCCTACTGTCGACGACATATACTTGTAAATAAATAA 636 0.5031 MTSASELFHSRRHRLGRYNNNLGLDSDHVPDLHHPRRLSRRLPHSPSSSERAAAADRFERRYRRSLLNAESVRDAFAPPSDRLPVGVLLARARLVERLRGDPLSPNRHSIGRDQESDDVVVSDLTSQMGRSHLLQEKPPGLSQEALESLHVEVFSSRDTGEDCSICLESFVDGDQLICLPCHHRFHSACLDPWVRCCGDCPYCRRHILVNK* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4274 211 SUPERFAMILY RING/U-box 150 209 - -
Amo19g4274 211 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 208 IPR013083 -
Amo19g4274 211 CDD RING-H2_PA-TM-RING 162 204 - -
Amo19g4274 211 ProSiteProfiles Zinc finger RING-type profile. 163 204 IPR001841 -
Amo19g4274 211 SMART ring_2 163 203 IPR001841 -
Amo19g4274 211 MobiDBLite consensus disorder prediction 19 56 - -
Amo19g4274 211 PANTHER SI:CH211-59O9.10 111 209 - -
Amo19g4274 211 PANTHER SI:CH211-59O9.10 1 115 - -
Amo19g4274 211 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHY1A-RELATED 111 209 - -
Amo19g4274 211 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHY1A-RELATED 1 115 - -
Amo19g4274 211 Pfam Ring finger domain 162 204 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4274 Amo-Chr19 159440482 159441294 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4274 1 207 C3H Transcription Factor Family AT1G49850 34.884 8.93e-32 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4274 - - aip:107619305 365.54