Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4272 ATGGTTGATGCTTTGAATGAAGTGCAACGCAGCGGCAATGCATTTGTTATTCCTGCTAAGAGGGATGCTGTATTGTTTGAAGGAGACAAAGATTTAGAGCCACACAATGGGATTGAATTCGAATCTCATGAAGCAGCATATTCATTTTATCAGGAATATGCCAAATCAATGGGATTCACAACTTCGATCAAGAATAGCAGACGCTCAAAGAAAACAAAAGAATTTATTGATGCCAAATTTGCGTGCTCTCGGTATGGCGTTACACCTGAGTCTGACAGCGGGAGCAGTCGAAGACCCAGTGTAAAGAAGACAGATTGCAAAGCCTGCATGCATGTGAAAAGAAGGTCAGAAGGGAAGTGGATCATTCATGAATTTATAAAGGAACACAACCATGAACTCTTACCGGCTTTGGCATATCATTTTCGTATTCATAGGAATGTCAAGTTAGCTGAAAAGAATAATATTGATATTTTGCATGCTGTTAGTGAACGAACCAGAAAAATGTATGTTGAGATGTCTAGGCAGTCTGGTGGGTGTCGAAATACTGGATCCCTCTTGGGGGACGCAAATGATCAGTTTGACAGAGGCCGACAGCTGGCTTTGGATGAGGGAGATGCCCATTTCATACTGGAGTATGAAGAGGAGGCAATTGCAGATTTTGATACATTGCACAAGCAGCCAGCACTCAGATCTCCTTCACCTTGGGAAAAACAAATGTCAACGGTTTATACACATGCAATATTTAAGAAATTCCAAGTTGAAGTTTTGGGTGTAGCTGGCTGTCAATCTAGAACAGAGCCTGGTGATGGATCAATTACAAAGTTTATAGTTCAAGATTATGAGAAAGATGAAGAGTTTTTGGTTACATGGAATGAGTTGAGCTCAGATGTCTCTTGTTTCTGTCGATTGTTTGAATATAAAGGTATCCTTTGCAGGCATGCGTTAAGTGTTCTCCAACGTTGTGGTTGTTCAAGTGTTCCACCTCATTATGTTATGAAAAGATGGACGAAAGATGCCAAAAGTAGGGAACCCATGGCAGATAGGACTCAGAAAGTACAAACAAGGGTGCAGCGTTATAATGATTTGTGTAAACGTGCTATTGATTTGAGTGAAGAAGGATCACTGTCTGAAGAGAGCTATAGTGTTGTTTTCCGTACACTTGTTGATACCCTGAAGAACTGTGTATATGTAAATAATTCTAACAACAATGGTGCAGAAACTAGCAACAATTCTTTTTCCGTTCATGAAGCAGAAGAAAATCAGGGTACCCTTCAATTGAAAGCAAGTAAGAAGAGGGGCACTGCTAGGAAAAGAAAGGTGCAGTCAGACCAGGAAGTTATGCTTGTTGACACACAAGATAGCCTGCAGCAAATGGATAATCTAAGCTCAGACACAATAACACTCAATGGATACTATGGTACCCAGCAGAGCATGCAAGGACTGGTACGGTTGAACTTAATGGAGCCGCCTCATGATGGTTACTATGTCAATCAACAGAATATGCAAGGCTTGGTAAGTTATCCTAATCATGATGATAAGCTGCAGATACGATTATATGTTTACACAGATTGGAATATACAATTATAA 1587 0.4033 MVDALNEVQRSGNAFVIPAKRDAVLFEGDKDLEPHNGIEFESHEAAYSFYQEYAKSMGFTTSIKNSRRSKKTKEFIDAKFACSRYGVTPESDSGSSRRPSVKKTDCKACMHVKRRSEGKWIIHEFIKEHNHELLPALAYHFRIHRNVKLAEKNNIDILHAVSERTRKMYVEMSRQSGGCRNTGSLLGDANDQFDRGRQLALDEGDAHFILEYEEEAIADFDTLHKQPALRSPSPWEKQMSTVYTHAIFKKFQVEVLGVAGCQSRTEPGDGSITKFIVQDYEKDEEFLVTWNELSSDVSCFCRLFEYKGILCRHALSVLQRCGCSSVPPHYVMKRWTKDAKSREPMADRTQKVQTRVQRYNDLCKRAIDLSEEGSLSEESYSVVFRTLVDTLKNCVYVNNSNNNGAETSNNSFSVHEAEENQGTLQLKASKKRGTARKRKVQSDQEVMLVDTQDSLQQMDNLSSDTITLNGYYGTQQSMQGLVRLNLMEPPHDGYYVNQQNMQGLVSYPNHDDKLQIRLYVYTDWNIQL* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4272 528 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 211 472 - -
Amo19g4272 528 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 20 212 - -
Amo19g4272 528 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 20 212 IPR031052 GO:0006355
Amo19g4272 528 Pfam SWIM zinc finger 288 321 IPR007527 GO:0008270
Amo19g4272 528 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 211 472 IPR031052 GO:0006355
Amo19g4272 528 SMART 26again6 297 324 IPR006564 GO:0008270
Amo19g4272 528 Coils Coil 525 528 - -
Amo19g4272 528 Pfam FAR1 DNA-binding domain 48 135 IPR004330 -
Amo19g4272 528 ProSiteProfiles Zinc finger SWIM-type profile. 286 322 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4272 Amo-Chr19 159402274 159406071 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo19g4272 FAR1 1.4e-29 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4272 - - lang:109346405 481.485