Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4263 ATGGCAACTGCAGTTACGCCGGCGTCGCTCGGCCGAGAGCTGTCGGATCCTCCGTCCGACGGAATCTCCAACCTCCGCTTCTCCAACCACAGCGATCTCCTCCTCGTCTCCTCTTGGGATAAGAGCGTGCGCTTGTACGATGCCAGCGCCAATGTGCTCAAGGCTGAGTTCATGCACGGCGGCTCCGTCCTCGATTGCTGCTTCCATGATGACTCTTCCGGTTTCAGCGCTGCCGGCGACAACACCGTCAGGCGCCTCCTCTTCGCCTCTAACAAGGACGACATCCTCGGAAAGCACGACGCTCCTGTTCGTTGTGTTGAGTACTCCTACGCCGCAGGGCAATTGATCACTGGTAGTTGGGATAAAACCCTGAAGTGCTGGGACCCTAGGGGTGCAAGTGGACAGGAGCGCACTCTGGTTGGGACATATCCACAACCTGAGCGCGTTTACTCCCTATCTCTTGTTGGACATCGGCTAGTTGTAGCAACGGCTGGAAGGCATGTCAATATTTATGATTTGAGGAACATGTCTCAACCCGAGCAACGGAGAGAATCTTCGTTGAAATATCAAACTAGATGTGTGCGCTGCTACCCTAATGGAACAGGATATGCACTTAGTTCTGTGGAAGGAAGGGTTGCAATGGAATTCTTTGACCTCTCCGATGCTAGCCAAGCAAAAAAATATGCCTTTAAGTGCCACCGAAAATCAGAAGCTGGAAGGGACATTGTCTATCCTGTAAATGCTATTGCATTCCATCCCGTATATGGTACGTTTGCCACAGGAGGTTGTGATGGTTATGTTAATGTTTGGGATGGAAACAACAAGAAGAGGCTATACCAGTACTCAAAGTATCCAACAAGCATTGCTGCACTTTCATTTAGCAGAGATGGGCGGCTCCTCGCTGTTGCATCAAGTTATACATACGAAGAGGGGCTTAAACCCCATGATAAAGATGCCATATACATCCGTGGCGTAAACGAGATTGAGGTCAAGCCAAAACCCAAGGTCCTTCCTCCAGCTTGA 1023 0.5064 MATAVTPASLGRELSDPPSDGISNLRFSNHSDLLLVSSWDKSVRLYDASANVLKAEFMHGGSVLDCCFHDDSSGFSAAGDNTVRRLLFASNKDDILGKHDAPVRCVEYSYAAGQLITGSWDKTLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGHRLVVATAGRHVNIYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSDASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPVYGTFATGGCDGYVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTYEEGLKPHDKDAIYIRGVNEIEVKPKPKVLPPA* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4263 340 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 96 128 - -
Amo19g4263 340 ProSiteProfiles Trp-Asp (WD) repeats profile. 96 128 IPR001680 GO:0005515
Amo19g4263 340 PANTHER MITOTIC CHECKPOINT PROTEIN BUB3.2 8 336 - -
Amo19g4263 340 Gene3D - 9 336 IPR015943 GO:0005515
Amo19g4263 340 ProSiteProfiles Trp-Asp (WD) repeats profile. 246 280 IPR001680 GO:0005515
Amo19g4263 340 SMART WD40_4 50 87 IPR001680 GO:0005515
Amo19g4263 340 SMART WD40_4 136 172 IPR001680 GO:0005515
Amo19g4263 340 SMART WD40_4 89 128 IPR001680 GO:0005515
Amo19g4263 340 SMART WD40_4 7 47 IPR001680 GO:0005515
Amo19g4263 340 SMART WD40_4 223 271 IPR001680 GO:0005515
Amo19g4263 340 PANTHER MRNA EXPORT FACTOR AND BUB3 8 336 - -
Amo19g4263 340 SUPERFAMILY WD40 repeat-like 18 305 IPR036322 GO:0005515
Amo19g4263 340 Pfam WD domain, G-beta repeat 96 128 IPR001680 GO:0005515
Amo19g4263 340 Pfam WD domain, G-beta repeat 20 47 IPR001680 GO:0005515
Amo19g4263 340 Pfam WD domain, G-beta repeat 230 271 IPR001680 GO:0005515
Amo19g4263 340 PRINTS G protein beta WD-40 repeat signature 34 48 IPR020472 -
Amo19g4263 340 PRINTS G protein beta WD-40 repeat signature 115 129 IPR020472 -
Amo19g4263 340 PRINTS G protein beta WD-40 repeat signature 258 272 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4263 Amo-Chr19 159324835 159327838 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4263 96 316 U-box Gene Family AT2G33340 24.889 5.54e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4263 K02180 - mnt:21387210 644.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g4263 19 159324835 159327838 Amo19g4263 19 159324835 159327838 ECH