Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4261 ATGGAACCAGCTCAGTTGATTTCTGAAGAATGGGGTTCTCTTAGTGGACTATACACAGCTGAGGAAGCTGAATTCATGACTCAGCTTCTTGCTGGTAACTATTCTGTCTCAGACAAGCATTATTCTAGTGTTGCCATGCCACCATCTTCTGCATTTTGGCCTTGCCATGAATCCACAAAAGTGAGCTTCAAAGGCATCAATGGCAATTCCTATTTGCCTCCTTCACATATTGAAAATGCTAACTATCTATGCTTCTCCCAAGGGAGTAGCTCCAGTACTGAGAATGGTAATATCTATTCCTATGATACCACAACAAATTTCGACTCCATGTCCACCGATAATTGTTTAGAAGGTGCCAAGTTTAGTCCACAGAGTAATGATAACTCGAGGGCGCAGATAAGTGGAATCATTGATGATGATGCTAAGATAGAGTGTGAAAGAATGGTTTTTGAACCTGCAGAGGACTTGGAGAACCCAACCAAAAGGCTTAGGAGTTCATCTGAGGTCCCAAGAAACATGAGGAATGTTAAATCAAGGAAGGAGAATCCACTTCCTTCTTCTTACACAAGCAACAGTGAAGAGGATAAAGGCCCTGCAGCTCCCAAAAATAGAAGAAGTAGCAGTGGTGCTGCCACAGATCCACAGAGCCTATATGCAAGAAAAAGAAGAGAAAGGATAAATGAAAGGTTGAGAATACTACAAACACTTGTCCCCAATGGAACTAAGGTGGATATCAGCACCATGCTTGAGGAAGCTGTCCATTATGTGAAGTTCTTACAACTCCAAATTAAGCTTCTAAGCTCTGATGATTTATGGATGTATGCTCCAATTGCTTACAATGGAATTAACATTGGACTAGACCTCTCTATTACTCCTCCAACTAAAGCAAGCTGA 894 0.415 MEPAQLISEEWGSLSGLYTAEEAEFMTQLLAGNYSVSDKHYSSVAMPPSSAFWPCHESTKVSFKGINGNSYLPPSHIENANYLCFSQGSSSSTENGNIYSYDTTTNFDSMSTDNCLEGAKFSPQSNDNSRAQISGIIDDDAKIECERMVFEPAEDLENPTKRLRSSSEVPRNMRNVKSRKENPLPSSYTSNSEEDKGPAAPKNRRSSSGAATDPQSLYARKRRERINERLRILQTLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDDLWMYAPIAYNGINIGLDLSITPPTKAS* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4261 297 Pfam Helix-loop-helix DNA-binding domain 220 260 IPR011598 GO:0046983
Amo19g4261 297 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 210 259 IPR011598 GO:0046983
Amo19g4261 297 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 189 292 - -
Amo19g4261 297 SMART finulus 216 265 IPR011598 GO:0046983
Amo19g4261 297 CDD bHLH_AtIND_like 211 273 - -
Amo19g4261 297 Gene3D - 213 268 IPR036638 GO:0046983
Amo19g4261 297 MobiDBLite consensus disorder prediction 179 196 - -
Amo19g4261 297 MobiDBLite consensus disorder prediction 154 221 - -
Amo19g4261 297 PANTHER TRANSCRIPTION FACTOR BHLH54 189 292 - -
Amo19g4261 297 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 210 275 IPR036638 GO:0046983
Amo19g4261 297 MobiDBLite consensus disorder prediction 154 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4261 Amo-Chr19 159315429 159316617 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4261 205 286 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 92.683 1.10e-49 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo19g4261 HLH 6.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4261 - - adu:107467178 583.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g4261 19 159315429 159316617 Amo19g4261 19 159315429 159316617 ECH