Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4243 ATGTCTACTGCTAGGAAAAGCCGTGGTCGCCAAAAGATTGAGATGAAAAAGATGAGCAATGAGAGCAACCTCCAAGTCACATTTTCCAAGCGCCGTGGTGGATTGTTTAACAAAGCTAGTGAACTTTGCACTCTCTGTGGTGCTGAAGTGGCAATCATCGTGTTTTCCCCAGGACAGAAGGTCTTCTCCTTTGGCCACCCAAGCGTTCAAACAATCATAGATCGTTACCTCATGCATGCGTCGATGCATAACTCATCAGGCACCATGCAGTTCATCGAGGCCCAGCGAAGTGCTAGTGTGTGTGAGCTGAACGAGCAGCTCACACGAATTAGCAACCAGCTGGACGTCGAAAAAAAACGTAGCAACGAACTGAGCCGCCTTCAAAAAACTGTCATGACACAGTTTTGGTGGGCTTTGTCCATTGAAAATATGGACAAGACCCAACTTAACCAACTGAAGGCGGCTTTAGAAAAACTCAAGAAGAGTGTTATGTACTATGCTGAAAAGCTCCATATTCAAGGCATTGTTGCTAACCCTCCTCAGCCACTCCTTGGTTTGCCATCTTCAAGTGATGTGGTGCATCATCACCAACCTCCTTTCCCACCACCAACAACTCATCATGTGCCTCAACTTTTCGCTTCCCATATTCGTCAACCTCTGATGCTTAACGGCGAGAACCGTTTGATGCATAATCCCATGTTTGCTGATTGGAGCATGTTGCACCAACATGGTTTTAACATCAACACTGGTATGGGAGGGTTTGGAAATATGGGTGGATTAATGTCTAAGAAAAAATCCAGCTTAGGTCGCCAAAAGATACCTATTGAGAAAATTCCAAAAAAGAGTCACTTACAAGTTACATTCTCTAAGAGGCGGTCAGGGCTATTCAAGAAAGCAAGTGAACTTTGCACACTTTGTGGGGTCGAGATAACGATCGTGGTTTTCTCTCCGGCCGATAAGGCCTTCTCCTTTGGCCATCCGGAGGTAGAGTCTATCATCGATCGTTATCTCGTCCTGAACCCGCCTCACGAGTCTATATCGAGTACTCAACAACTGGTTGAGGCGCATAGAAACGCTAATGTCCGTGATCTCAATATGCAACTTACACAACTGCTTAACCATTTGGAGATGGAGAAGAAGCGTGGGGAGGAGCTTGATCATGTGAGGAAAGCGAGGCAGAGGCAGTTTTGGTGGGAAAGCTCTACTGATGATCTTGGTTTTCATGAATTGATCCAACTAAAGGCATCAATTGAGGAGCTCAAGAAGAACTTGGCAAAACATGTTAGCAAAATCATCATGATGGACCAAACCAACATGGATTCACGAATTATTGGGGTTAATAGTAATAATGGATTACTTAATCGTTATGATCATGCATTTGATAGCAACAAATCTGATGCTGCTGCCTTCAATGTTGCTCCTACACTGCCTCCTCCTAATAACAATGCCTATTACATGGGTTTTCGTCATGTTTGGGATCCGAAGAAGTGA 1491 0.446 MSTARKSRGRQKIEMKKMSNESNLQVTFSKRRGGLFNKASELCTLCGAEVAIIVFSPGQKVFSFGHPSVQTIIDRYLMHASMHNSSGTMQFIEAQRSASVCELNEQLTRISNQLDVEKKRSNELSRLQKTVMTQFWWALSIENMDKTQLNQLKAALEKLKKSVMYYAEKLHIQGIVANPPQPLLGLPSSSDVVHHHQPPFPPPTTHHVPQLFASHIRQPLMLNGENRLMHNPMFADWSMLHQHGFNINTGMGGFGNMGGLMSKKKSSLGRQKIPIEKIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEITIVVFSPADKAFSFGHPEVESIIDRYLVLNPPHESISSTQQLVEAHRNANVRDLNMQLTQLLNHLEMEKKRGEELDHVRKARQRQFWWESSTDDLGFHELIQLKASIEELKKNLAKHVSKIIMMDQTNMDSRIIGVNSNNGLLNRYDHAFDSNKSDAAAFNVAPTLPPPNNNAYYMGFRHVWDPKK* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4243 496 Coils Coil 358 385 - -
Amo19g4243 496 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Amo19g4243 496 SUPERFAMILY SRF-like 9 90 IPR036879 GO:0003677|GO:0046983
Amo19g4243 496 ProSiteProfiles MADS-box domain profile. 268 328 IPR002100 GO:0003677|GO:0046983
Amo19g4243 496 Gene3D - 281 345 IPR036879 GO:0003677|GO:0046983
Amo19g4243 496 Gene3D - 88 173 - -
Amo19g4243 496 Gene3D - 347 446 - -
Amo19g4243 496 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Amo19g4243 496 Coils Coil 410 430 - -
Amo19g4243 496 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Amo19g4243 496 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Amo19g4243 496 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Amo19g4243 496 SUPERFAMILY SRF-like 269 351 IPR036879 GO:0003677|GO:0046983
Amo19g4243 496 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 179 - -
Amo19g4243 496 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Amo19g4243 496 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 277 324 IPR002100 GO:0003677|GO:0046983
Amo19g4243 496 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Amo19g4243 496 SMART madsneu2 268 327 IPR002100 GO:0003677|GO:0046983
Amo19g4243 496 PANTHER MADS BOX PROTEIN 7 179 - -
Amo19g4243 496 PANTHER MADS BOX PROTEIN 267 441 - -
Amo19g4243 496 Gene3D - 20 87 IPR036879 GO:0003677|GO:0046983
Amo19g4243 496 Coils Coil 149 169 - -
Amo19g4243 496 CDD MADS_MEF2_like 269 337 IPR033896 GO:0000977|GO:0045944
Amo19g4243 496 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 267 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4243 Amo-Chr19 159172254 159182574 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4243 265 484 Type I MADS-box Gene Family AT5G60440 45.607 5.14e-52 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Amo19g4243 SRF-TF 6.5e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4243 - - aip:107616132 479.944
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g4243 19 159172254 159182574 Amo19g4243 19 159172254 159182574 ECH