Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4230 ATGAGAACTTGGAAATCCTCTGCAACAAACTTGATAGTACTTGTGGCTTCGGTGTTCGTGTTTATGAGCTTTGAAAGTGAAGCAGCTCCAACATTCACCTCTAATTTCTGCACAGATGGATCCTATTACCTACCTAATTCTTCATATTCTTCCAATTTAAATCTCTTCTTATCTTCCCTCATCTCCAACGCTTCTCTCCACCACGGTTTCTACCGCACCACCGTCAACCAGGGTGAGATCAAGGGCTACTTCCTCTGCCGCCCTGACGTCACCTCTACCCTCTGCAGCGACTGTGTAACCACCGCAGCCAAAGAGATAAGGAAGCGATGCACCAATCAAACCGAGTCCATAATCTGGTACGACGAGTGCATGCTACGCTACACCAACCTCTCCTTCTTGAACAACATAGTCCCCGGAATGAACCTTTACAACGAGAAAAACATCTCTGACTCCGAGCTCCAACAGTTCAACGATTTGGTGGCAACGACGCTGAATGAAATTGCTAAGCAAGCTTCAAACTCTGCCTCGGGTGATTACAAGTTTGCTACCAAAGAAGCTGCCATCAGAGGGTCGCAGAAGCTCTACACGATGGCGCAGTGCGTTCCTGACATGTCCTCTTATGACTGCAACATGTGTTTCCAAAGTGGCATCGCTTCCATTCCAACTGGCAAACAAGGCGCACGATCTCTGCTCCCAATTTGCAATCTCAGATACGAGCTGAACCCATTTTACAACGAATCGTGGTCGTCCACTCAACCAGTTCTTCCTCCATTTTCAAAAGGAGGAAAGAGTGATGCCACTTTAATTGCTGCCATTGTTGCCCCCATTGGTGTTGTTGCGGTACTTTTCATTCTCGGCTGCTGCATCCTTCGTCGGAGGTCAAGAAAGAAGTATAGTTCATTTGCCCGGGATTCAATTCGGGAGGATCTTACAGATGTCGAGTCATTGCAGTTTGATTTCGCTACAATCGAAGCTGCTACTGACTGTTTCTCAGATGAGAACAAGATTGGTCAAGGTGGATTTGGTGTGGTTTATAAGGGTGTTCTCCCTGAAGGACAGGAGATAGCAGTGAAGAGGCTTTCATTGACATCCTTGCAGGGTGCAGTAGAGTTCAGGAATGAAGCTATTCTTGTGGCCAAGCTTCAACACAGAAACTTAGTGAGGCTCTTGGGATATTGCTTGGAGGGGCGTGAGAAGCTGCTTGTCTATGAATACATACCAAACAAAAGCCTTGATTACTTTCTATTCGATCCTGTAAAGCAAAGAGAGTTAGACTGGTCAAGACGCTACAAGATTATAACTGGCATTGCCAGAGGAATTCTTTATCTACATGAAGATTCTCAACTTAGGATTATACACCGTGATCTCAAAGCTAGTAATGTTCTATTAGATGAGAACATGAACCCAAAGATTTCAGATTTTGGTATGGCAAAAATTTTCGAGGCAGATCAAACTCAAGTGAATACAGGACGGATAGTTGGGACATATGGTTATATGTCTCCAGAATATGCAATGCGTGGACAGTTCTCGGTGAAATCTGATATCTTCAGCTTTGGTGTATTAGTTTTGGAGATTGTTAGTGGCAAGAAGAACACTGAATTTTATCAAACACATCTTGCTGATGACCTCTTAAGCTATGCTTGGAAAAATTGGACACAGAACACGCCTCTGGAGCTGTTGGATCCAACACTGAGAGGCTCTTATTCAAGAAATGAAGTCATCAGATGCATCCATATTGGTTTATTATGTGTTCAGGAAAGTCCTTCAGCGCGGCCTTCAATGGCGAATATTTTGCTCATGCTTAACAGTTATTCAGTGACCTTATCATTACCACGACAACCAGCTTCTTTCCTGCATGGAAGAAAACCAAACAGGCTACAAGATGGGCTTGATTCTGATCAGTCTACCACCTCTTCAGTTCCTTGGTCTATCAATGAAGTATCCATCACTCAACTAGTCCCTCGGTAA 1968 0.4426 MRTWKSSATNLIVLVASVFVFMSFESEAAPTFTSNFCTDGSYYLPNSSYSSNLNLFLSSLISNASLHHGFYRTTVNQGEIKGYFLCRPDVTSTLCSDCVTTAAKEIRKRCTNQTESIIWYDECMLRYTNLSFLNNIVPGMNLYNEKNISDSELQQFNDLVATTLNEIAKQASNSASGDYKFATKEAAIRGSQKLYTMAQCVPDMSSYDCNMCFQSGIASIPTGKQGARSLLPICNLRYELNPFYNESWSSTQPVLPPFSKGGKSDATLIAAIVAPIGVVAVLFILGCCILRRRSRKKYSSFARDSIREDLTDVESLQFDFATIEAATDCFSDENKIGQGGFGVVYKGVLPEGQEIAVKRLSLTSLQGAVEFRNEAILVAKLQHRNLVRLLGYCLEGREKLLVYEYIPNKSLDYFLFDPVKQRELDWSRRYKIITGIARGILYLHEDSQLRIIHRDLKASNVLLDENMNPKISDFGMAKIFEADQTQVNTGRIVGTYGYMSPEYAMRGQFSVKSDIFSFGVLVLEIVSGKKNTEFYQTHLADDLLSYAWKNWTQNTPLELLDPTLRGSYSRNEVIRCIHIGLLCVQESPSARPSMANILLMLNSYSVTLSLPRQPASFLHGRKPNRLQDGLDSDQSTTSSVPWSINEVSITQLVPR* 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4230 655 ProSiteProfiles Gnk2-homologous domain profile. 31 132 IPR002902 -
Amo19g4230 655 ProSiteProfiles Protein kinase domain profile. 330 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g4230 655 CDD STKc_IRAK 336 602 - -
Amo19g4230 655 ProSitePatterns Protein kinases ATP-binding region signature. 336 358 IPR017441 GO:0005524
Amo19g4230 655 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 8 652 - -
Amo19g4230 655 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 8 652 - -
Amo19g4230 655 ProSiteProfiles Gnk2-homologous domain profile. 136 243 IPR002902 -
Amo19g4230 655 Pfam Salt stress response/antifungal 151 239 IPR002902 -
Amo19g4230 655 Pfam Salt stress response/antifungal 37 129 IPR002902 -
Amo19g4230 655 SUPERFAMILY Protein kinase-like (PK-like) 315 623 IPR011009 -
Amo19g4230 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 451 463 IPR008271 GO:0004672|GO:0006468
Amo19g4230 655 Gene3D Transferase(Phosphotransferase) domain 1 406 610 - -
Amo19g4230 655 Pfam Protein tyrosine and serine/threonine kinase 333 598 IPR001245 GO:0004672|GO:0006468
Amo19g4230 655 Gene3D Phosphorylase Kinase; domain 1 291 405 - -
Amo19g4230 655 SMART serkin_6 330 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g4230 655 Gene3D - 29 132 IPR038408 -
Amo19g4230 655 Gene3D - 139 243 IPR038408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4230 Amo-Chr19 159025206 159028442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4230 17 655 Receptor kinase-like Gene Family AT4G05200 49.399 0.0 642
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo19g4230 PK_Tyr_Ser-Thr 5.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4230 - - gmx:113000776 928.317