Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4227 ATGTCGTTTCTTAAACTCATATTATTCAACTACCTTTGCTTCTTTCTCAGTCTCATCACCACCTTCAATTTATCCAACCTCCAAACCCTTCTCACCTCTCTCTCTTCCCACGCGGCCACCGCCGGCTTCTACAACGCCACCGCCGGCGGCGGCCACCCGAACGAAACAATCTATGGGATGTACATGTGCCGCGGTGACGTCAGCAACCAGACATGCCAAGAGTGCGTAGAAACAGCAAAGCAGGAAATAGGGTCAAGGTGTGGGAATAACTCGAAAGAAGGCATAATTTGGTACCACCAATGCTTCCTTCGCTACTCGAATCGTTCGTTCTTCTATACCTTGGATGAGTGGCCTCGCCTTGAGTACATCGTTCACAACAATGGCAGCAATGCGGGCAATGAAGGAAGCTACGGGTGGTTGTTGGCGAGCACGTTGAACGAGGCAATTGAAGAGGCGAAGAGCAAGATGAAGAAATTTGCAACAAAACACGCGAGCTTGAATAGTTCTAAGAACGTATATACACTTGTTCAGTGCACTCCGGATCTGTGGAGAGAAGATTGCAGTAAGTGTTTGAATGATTTAATGAAGGATATTCCTATGTGCTGTTTGGGAACCGATGGTGGGATGGTTCTTTCTCCAAGCTGCAATTTGATGTTCGGATTACGCCAATTTTACTCCAATGTTACTATTCGTACCACCTGGAATTCACTACCTAATTCTAGACTTGGTAAATATCAAACTAAGCTTTCAGGGAAACCAAGTGGCAGAAGATTAAAGATTATCATAGCGTCTACTGTTCCTATTGTTGCTTTCTTGATGCTTTATTTCTTTGGCTATCATTTCCGGCGGATAAATGCTCTGCGGCGTTATAAGGCTATCCTTAAAGAAAATTTTGGAAACGAAAGTAGAGGTGGATTTGGAGAAGTTTACAAGGGTATTCTTTCTGATGGACGAGAAATAGCGGTAAAAAGATTGTCAATAACTTCCGAGCAAGGCATTGCAGAATTTAAGAATGAAGTTTTGCTGATAGCTAAACTTCAACACAGAAATCTTGTTGCATTATTGGGATTTTGCTTACAAGAAGGAGAGAAAATACTTATTTATGAATTTGTTCCTAACAAGAGCCTAGACTACTTTTTATTCGGTTCTGAACTGCATAGGCTATTAAGTTGGTGTGAGAGATTTAAAATTATAGGCGGAATTGCTAGTGCAATTCTTTATCTACATGAGTATTCTCGCCTCAAAATTATACACCGTGATATCAAACCTAGTAATATTTTATTAGATGCCAACATGAATCCTAAAATTTCAGATTTTGGCATGGCAAGAATGGTTGCTATTGACCAAGATCAAGGACGAACACAATATGCTATGTTAGGAAAATATTCGGAAAAATCTGATATCTTCAGTTTTGGAGTTATGATTTTGGAGATTGTTAGTGGCAAAAAAAATTCAAGTTCTTATGACTCTTACTACAACGATGGTCTCTTGAGTCATGCTTGGAAGCAATGGAGAGATGGGACACCATTTGAAATACTGGACCCAAATCTACATGAATCATGTTCTCAAATGGAAGTGATTAGATGCATCCAAGTTGGTTTACTATGTGTTCAAGAAAATCCTAATGATAGGCCACAAATGGCAGAAGTAGTTTCATATCTAAGTAACCTCTCCATTGAGTTGCCATTTCCTCACGAGCCTGCTTTTTTTGTACATGGTAGAATGAATCCAAATATGGTCGCACTAGAAGTTGATTCAGGACACCTAAGCAATAGTTCCACTCAACATTCACTCAACGAAATAACCCTAACACTAACAGTACTTTTGACTTCAGAACATGCCTCAGCTTCTGTTTTCGATTCAGTCAACTGCACAACCAACTCCACCTTCGCTCCAAACAGCACCTTCGACGTCAACCTCAGCACACTCTTCTCATATCTTACTTCCAACGTCACCAACGGCAACAATCTCAGGTTCTTCAACGCAACTGCAGGCTCTCACGGTTCAGACGCCGCCGTCTACGGCCTCTTCATGTGCCGTGGTGACGTGCCACTTGCACTGTGCCGAGAGTGCGTCGGTTTCGCAGCGCAGAACATAGCCTCGTCGTGTCCCTCTGCTAACGAGGCTGTCATCTGGTACAACGAGTGCTTGTTACGCTACTCCAACAGATTCTTCTTCTCCACCATGGACGAATGGCCAAGGTACCAGATCAAGATCCCGTTGGGGGACCCTGTGGTTTTGCACAGCAAAGGTTTCTACAGTGCTTTAGGGTCCATATTCAATGGGATTGGAAATGAAGCAGCCTTGGCTCTTGGCGGTTCTGATAACAAGTATGCAGTGAAACAAGCTGCCGCCACGGCCACCACCACAGTGTACGGTCTTGCTCAGTGCACGCCGGACCTCTCAGCCGCTGACTGCAAGCGGTGTATCGTGGACGCGGCGGCTGAATTTCCAAGGACTTGCTGCGGCGGGAGCATAGGGGGAAGTGTTATGTTTCCAAGTTGCATTGTTAGGTATGAAACGTATCCGTTTTATCAGCATTCAGGTACCTCCGGGACATTAACAACAACTAATAAGGTTAGGCCTGATATGAGTGCCTCAGAGTCTTTTGAATTTGATTTGGATACAATTCAATTCGCAACAAACAATTTTTCTCAAGGGAGCAGGATAGGCAAAGGAGGGTATGGAGAAGTCTACAAGGGAATTCTTCCTAGCGGAGAAGAAATAGCAGTGAAGAGGCTCTCAAGAAATTCTGGACAGGGGGTGGAGGAGTTCAAGAATGAAGTATTGTTGATAGCTAAACTTCAGCACAGGAATTTGGTGAGGTTAATGGGATTCTGTCTCGAAGATCAAGAGAGTATACTTATCTATGAATATGTACCTAACAAGAGCCTTGATCACTTCCTATTTGATCCCTCCAAGCGAAGAGAATTAACTTGGTCGCAACGTTATAAAATCATAAAAGGAATTGTTCGAGGAATTCTTTATCTTCATGAAGATTCTCGTCTCATGATAATACATCGAGACCTCAAACCAAGCAATGTTCTACTAGATAATCACATGAATCCCAAAATTTCTGACTTTGGAATGGCGAGGATAGTAGATACGGATCACATCCAAGGATGTACTAACAGAGTAGTGGGCACATATGGTTATATGTCTCCCGAATATGCAATGCATGGACAATTTTCTGTAAAATCAGATGTTTTTAGTTTTGGAGTCATGGTTCTTGAGATTTTAAGTGGAAAGAAGAATTCTTCTTCTTTTGATTCATGTCGTATTGACGACCTCTTGAGTTATGCATGGAAACTGTGGAATAGTGATGAATCAGTATTTCAATTGCTGGATCCAGTTCTGCAAGAATCTTATAATCCAAATGAAGTTGAAAGATGTATTCAGATTGGATTATTGTGTGTACAAGAAAATCCAGATGAGAGGCCTACAATGGGGACCATAGCTTCATATCTTACAAATGATTCAGTTGAAATGCCATATCCTCAGGAACCAGCATTTTTCATGAAAGGAAGGACAAGAAGGCATGCATCTGGACATGAATCATATTCATCAGGTCACACCACCAAATATTCTTTCTCATCCTCTGTAAATGAGATGCCTACAACTGCTTTCTTCCCTCGATAG 3639 0.4226 MSFLKLILFNYLCFFLSLITTFNLSNLQTLLTSLSSHAATAGFYNATAGGGHPNETIYGMYMCRGDVSNQTCQECVETAKQEIGSRCGNNSKEGIIWYHQCFLRYSNRSFFYTLDEWPRLEYIVHNNGSNAGNEGSYGWLLASTLNEAIEEAKSKMKKFATKHASLNSSKNVYTLVQCTPDLWREDCSKCLNDLMKDIPMCCLGTDGGMVLSPSCNLMFGLRQFYSNVTIRTTWNSLPNSRLGKYQTKLSGKPSGRRLKIIIASTVPIVAFLMLYFFGYHFRRINALRRYKAILKENFGNESRGGFGEVYKGILSDGREIAVKRLSITSEQGIAEFKNEVLLIAKLQHRNLVALLGFCLQEGEKILIYEFVPNKSLDYFLFGSELHRLLSWCERFKIIGGIASAILYLHEYSRLKIIHRDIKPSNILLDANMNPKISDFGMARMVAIDQDQGRTQYAMLGKYSEKSDIFSFGVMILEIVSGKKNSSSYDSYYNDGLLSHAWKQWRDGTPFEILDPNLHESCSQMEVIRCIQVGLLCVQENPNDRPQMAEVVSYLSNLSIELPFPHEPAFFVHGRMNPNMVALEVDSGHLSNSSTQHSLNEITLTLTVLLTSEHASASVFDSVNCTTNSTFAPNSTFDVNLSTLFSYLTSNVTNGNNLRFFNATAGSHGSDAAVYGLFMCRGDVPLALCRECVGFAAQNIASSCPSANEAVIWYNECLLRYSNRFFFSTMDEWPRYQIKIPLGDPVVLHSKGFYSALGSIFNGIGNEAALALGGSDNKYAVKQAAATATTTVYGLAQCTPDLSAADCKRCIVDAAAEFPRTCCGGSIGGSVMFPSCIVRYETYPFYQHSGTSGTLTTTNKVRPDMSASESFEFDLDTIQFATNNFSQGSRIGKGGYGEVYKGILPSGEEIAVKRLSRNSGQGVEEFKNEVLLIAKLQHRNLVRLMGFCLEDQESILIYEYVPNKSLDHFLFDPSKRRELTWSQRYKIIKGIVRGILYLHEDSRLMIIHRDLKPSNVLLDNHMNPKISDFGMARIVDTDHIQGCTNRVVGTYGYMSPEYAMHGQFSVKSDVFSFGVMVLEILSGKKNSSSFDSCRIDDLLSYAWKLWNSDESVFQLLDPVLQESYNPNEVERCIQIGLLCVQENPDERPTMGTIASYLTNDSVEMPYPQEPAFFMKGRTRRHASGHESYSSGHTTKYSFSSSVNEMPTTAFFPR* 1213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4227 1212 CDD STKc_IRAK 302 557 - -
Amo19g4227 1212 ProSiteProfiles Gnk2-homologous domain profile. 733 844 IPR002902 -
Amo19g4227 1212 ProSiteProfiles Protein kinase domain profile. 295 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g4227 1212 CDD STKc_IRAK 890 1158 - -
Amo19g4227 1212 Gene3D - 746 844 IPR038408 -
Amo19g4227 1212 Gene3D - 617 725 IPR038408 -
Amo19g4227 1212 Gene3D - 120 224 IPR038408 -
Amo19g4227 1212 Gene3D - 19 110 IPR038408 -
Amo19g4227 1212 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 21 295 - -
Amo19g4227 1212 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 302 579 - -
Amo19g4227 1212 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 862 1190 - -
Amo19g4227 1212 ProSitePatterns Serine/Threonine protein kinases active-site signature. 416 428 IPR008271 GO:0004672|GO:0006468
Amo19g4227 1212 Gene3D Transferase(Phosphotransferase) domain 1 960 1165 - -
Amo19g4227 1212 Gene3D Transferase(Phosphotransferase) domain 1 372 561 - -
Amo19g4227 1212 ProSiteProfiles Protein kinase domain profile. 884 1156 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g4227 1212 Pfam Protein tyrosine and serine/threonine kinase 303 554 IPR001245 GO:0004672|GO:0006468
Amo19g4227 1212 SUPERFAMILY Protein kinase-like (PK-like) 870 1189 IPR011009 -
Amo19g4227 1212 SMART serkin_6 295 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g4227 1212 SMART serkin_6 884 1156 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g4227 1212 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 302 579 - -
Amo19g4227 1212 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 600 856 - -
Amo19g4227 1212 Gene3D Phosphorylase Kinase; domain 1 847 959 - -
Amo19g4227 1212 ProSiteProfiles Gnk2-homologous domain profile. 119 224 IPR002902 -
Amo19g4227 1212 SUPERFAMILY Protein kinase-like (PK-like) 303 576 IPR011009 -
Amo19g4227 1212 ProSitePatterns Protein kinases ATP-binding region signature. 890 912 IPR017441 GO:0005524
Amo19g4227 1212 ProSiteProfiles Gnk2-homologous domain profile. 618 725 IPR002902 -
Amo19g4227 1212 Pfam Protein kinase domain 885 1152 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g4227 1212 Gene3D Phosphorylase Kinase; domain 1 302 371 - -
Amo19g4227 1212 Coils Coil 142 162 - -
Amo19g4227 1212 ProSiteProfiles Gnk2-homologous domain profile. 4 110 IPR002902 -
Amo19g4227 1212 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1005 1017 IPR008271 GO:0004672|GO:0006468
Amo19g4227 1212 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 600 856 - -
Amo19g4227 1212 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 21 295 - -
Amo19g4227 1212 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 862 1190 - -
Amo19g4227 1212 Pfam Salt stress response/antifungal 25 107 IPR002902 -
Amo19g4227 1212 Pfam Salt stress response/antifungal 752 842 IPR002902 -
Amo19g4227 1212 Pfam Salt stress response/antifungal 134 219 IPR002902 -
Amo19g4227 1212 Pfam Salt stress response/antifungal 624 722 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4227 Amo-Chr19 158968037 158976376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4227 24 572 Receptor kinase-like Gene Family AT4G05200 41.554 1.80e-141 443
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo19g4227 Pkinase 1.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4227 - - gsj:114402116 1434.85