LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo19g4203	ATGATGAGTRCCTTCTACTTWTTCCTTCTGCTTCCATCTRTCTTCTTCTTCTTCCTCCCCATTCACTGCTTTAACATCATCCAAGGAGCCACCGATAAAAATACTAAAGCTTATTATAACTGCACAATCAATGGCACTTTTGCATCCAATAGCACATACCGTTCCAACACCATAACACTCCTTAACTGGCTCTCCTCCAATGCCACCACTTCCAGAACCTACAACACTACAGTAATTGGTAAAACAACTTCAGACACAGTCTATGGACTCTACATTTGTACAAGAGACAGCACACCAGGAATGTGCCAAGACTGTGTGGCACAAGCATCAAAACTTATCTCATCTCTTTGTAGCAAAGCAAAAGAAGCCATGGTTTGGTACCGTGTATGCTTTATGCGTTACTCTAATCGTAATTTCTTCTCCAATGTGGAGGAAAGTCCAAGTATCACCTTTGTGAGTGACATTGACTATGTGGGTCAAGTTGGGCGCTACAACACTATTCTCTGGAATATGCTGAATGATATGAGAACTATGGCCGCTGCTGATTCAAATAAAACGGCTGCAATGACTCAGAAAATCACAGATCATCAAAACATATATGGTTCCGCTTGGTGTCTCCCTTATCTTTCCACCGAGAACTGTAGCTGGTGTCTCAGTGATGCCATTGCATATATTCCAGCAGGTAAACGAAAGCAGAAGAACTTACCATTAAGTAAAGTCGCTGTTCCAATTGCCATTGTCGTTGCACTTGTGCTTTTAACTTTGGGTGGTTGCTGCTTTCTACGTAGAAAAGGAAGAAAGAATCAAGATGATATTCTCAAAGAAAACTTTGGGAATGATATAAGCACTTTGGAGTCCTTGCGATTTGAACTAGCCAGGATTGAAGCTGCAACAAATAGATTTGCCACAGAGAACAGGGTAGGCAAAGGTGGATTTGGAGAAGTCTATAAGGGTATTCTTTTAAATGGACAAGAAATTGCTGTGAAGAGGCTTACTAGAAGCTCTGGACAAGGTGCAATAGAGTTTAAAAATGAGATTCTTGTTATAGCTAAGCTTCAACACAGAAATCTAGTGAGGTTACTGGGATTTTGCTTGGAAGATCCTCAAAAGCGAAGACAATTATCTTGGATTCAACGTAAACAGATCATCATGGGAATTGCTAGAGGAATTCTATACTTGCATGAAGATTCTCGCCTCAAAATAATACACCGTGATCTAAAACCTAGTAATGTTTTGTTAGATAGTAATATGAATCCAAAAATATCAGATTTTGGCATGGCTAGAATTGTTACTGTGGATCAAAACGAAGAAAACACACATAGAATAGTCGGAACATATGGTTATATGTCTCCAGAATACGCAATGTTTGGACAATTCTCCGTAAAATCGGATGTGTTTAGTTTTGGAGTCATGGTACTCGAGATTATTAACGGGAAGCGAAAAGGAACCTCCTCTTCTGAATCAGAGTGTATTGATGACATCCGGAGACATGCTTGGGAAAAATGGACAGAGAAAACGCCAATGGAACTATTAGATCCTAACATGGAAGGCCCTTATTCAAAGGAAGAAGTCATAAAATGCATTCACATTGGTTTGTTATGTGTTCAAGAAGAACCAAATGAGAGACCTACGATGGCAACAATTGTTTTTTACCTAAATAGCTCTTCACTCAACTTGCCATCCCCTCGTGAACCAGCATATTATTTCAAGAACAATAGAACAGAGGAAAGCATGACAACCAGCAAGGAGTTGGTTAATGACAGCGATTCCATCAATGAAATCACCATAAGTAAATTCTTTCCTCGTTAA	1809	0.3947	MMSXFYXFLLLPSXFFFFLPIHCFNIIQGATDKNTKAYYNCTINGTFASNSTYRSNTITLLNWLSSNATTSRTYNTTVIGKTTSDTVYGLYICTRDSTPGMCQDCVAQASKLISSLCSKAKEAMVWYRVCFMRYSNRNFFSNVEESPSITFVSDIDYVGQVGRYNTILWNMLNDMRTMAAADSNKTAAMTQKITDHQNIYGSAWCLPYLSTENCSWCLSDAIAYIPAGKRKQKNLPLSKVAVPIAIVVALVLLTLGGCCFLRRKGRKNQDDILKENFGNDISTLESLRFELARIEAATNRFATENRVGKGGFGEVYKGILLNGQEIAVKRLTRSSGQGAIEFKNEILVIAKLQHRNLVRLLGFCLEDPQKRRQLSWIQRKQIIMGIARGILYLHEDSRLKIIHRDLKPSNVLLDSNMNPKISDFGMARIVTVDQNEENTHRIVGTYGYMSPEYAMFGQFSVKSDVFSFGVMVLEIINGKRKGTSSSESECIDDIRRHAWEKWTEKTPMELLDPNMEGPYSKEEVIKCIHIGLLCVQEEPNERPTMATIVFYLNSSSLNLPSPREPAYYFKNNRTEESMTTSKELVNDSDSINEITISKFFPR*	603

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo19g4203	602	Gene3D	Transferase(Phosphotransferase) domain 1	368	554	-	-
	Amo19g4203	602	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	12	222	-	-
	Amo19g4203	602	Gene3D	Phosphorylase Kinase; domain 1	264	367	-	-
	Amo19g4203	602	SUPERFAMILY	Protein kinase-like (PK-like)	287	577	IPR011009	-
	Amo19g4203	602	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	227	602	-	-
	Amo19g4203	602	PANTHER	CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN	12	222	-	-
	Amo19g4203	602	ProSiteProfiles	Gnk2-homologous domain profile.	145	251	IPR002902	-
	Amo19g4203	602	ProSiteProfiles	Protein kinase domain profile.	301	557	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Amo19g4203	602	PANTHER	CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN	227	602	-	-
	Amo19g4203	602	Pfam	Salt stress response/antifungal	162	223	IPR002902	-
	Amo19g4203	602	Pfam	Salt stress response/antifungal	41	136	IPR002902	-
	Amo19g4203	602	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	401	413	IPR008271	GO:0004672\|GO:0006468
	Amo19g4203	602	SMART	serkin_6	301	552	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Amo19g4203	602	Pfam	Protein kinase domain	303	549	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Amo19g4203	602	Gene3D	-	152	239	IPR038408	-
	Amo19g4203	602	Gene3D	-	33	139	IPR038408	-
	Amo19g4203	602	ProSiteProfiles	Gnk2-homologous domain profile.	35	139	IPR002902	-
	Amo19g4203	602	ProSitePatterns	Protein kinases ATP-binding region signature.	307	329	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo19g4203	Amo-Chr19	158682054	158685179	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo19g4203	13	602	Receptor kinase-like Gene Family	AT4G05200	39.673	7.23e-158	467

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Amo19g4203		Pkinase	3.8e-37	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo19g4203	-		-	gmx:100793219	779.245