Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4195 AATTTTATAACCCTAAAATGGAAAGTGCACAGAAGAGACAACAGAATCCAATCTCATCATGAGTTGAAAATTTCTAAAGTTTTTGTGAAAGAATATTGGAGAGGAGTATCAAATTCTATAGTGTTAAAGCTACAAAATAATGTTGAACAAAGAGTACATTGGATTCAAAAGAATGAAGATAAAGTTTGGTTGGAACAAGGTTGGAAACAAATTGTGGAGGATTTTGGCTTAAAACATTCTCAATTTTTGACTTTTGACTATAAAAGACGATATGTTGCTGGTTTCTCTGATGCACTCAATGGAGGTTATGAATCTTGGGGGCCTTTATTTGGCAAAGTTTTCTTTGTATTTTGGGTTATTTTTTACCTGTATCCATTCCTTAAAGGTCTCATAGGTCGCCAGAACAGAACACCAATCATTGTTATACTTTGA 432 0.331 NFITLKWKVHRRDNRIQSHHELKISKVFVKEYWRGVSNSIVLKLQNNVEQRVHWIQKNEDKVWLEQGWKQIVEDFGLKHSQFLTFDYKRRYVAGFSDALNGGYESWGPLFGKVFFVFWVIFYLYPFLKGLIGRQNRTPIIVIL* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4195 143 Pfam Cellulose synthase 92 143 IPR005150 GO:0016020|GO:0016760|GO:0030244
Amo19g4195 143 Gene3D - 6 96 IPR015300 -
Amo19g4195 143 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 8 [UDP-FORMING] 92 143 - -
Amo19g4195 143 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 92 143 - -
Amo19g4195 143 Pfam B3 DNA binding domain 18 90 IPR003340 GO:0003677
Amo19g4195 143 SUPERFAMILY DNA-binding pseudobarrel domain 20 90 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4195 Amo-Chr19 158599845 158600728 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4195 92 143 Glycosyltransferase AT4G18780 86.538 3.80e-27 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo19g4195 B3 5.5e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4195 K10999 - ahf:112718388 120.938