Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4190 ATGCAGGGCGAACTAGAAGAATTTACAAGCCCCAACAGAAGTGCCTCTAGAAAGATGCAAACACCGGATGCTGGAACAGAACAATGTCATTTGTCAGAGAAAACATCTCAGGTGGGTTCCGAATGTTTAGACAACAAGCAAGGTGTGCCTGGCAATGTGTTAGGCAGTTCTCTTATTGATGACCAAGCTTCTGAGAAAATGGCCAAGAGTTCTGAGTGTTTGGACAACAAGCAGAGCATGCCTAGTGATGTGTTAACAAGCTCCATGATTGATGAAAACTCAAACCGTGTGGCCGAGAATCCTGAGCTTTTGGACGACAAGCAAAGCATGCATAGTGATGTGTTAACCGATTCCGTGATTGATGAAAAATCAAACCAAGTTTCTGAAAAAATGACTGATGGTACGCAGGGTTTGGGCAACAAGAAAAACTTGCAAGGTGAAGTGTTAACCAATTGTGTAGTTGATGAAAAATCAAATGAGGTCTCTGAAAAATTGATCGAGGGTCCTGAGCATTTGGCCAGCAGGCAAAGCATGCATAGCGATGATGCATTGACCAATTCTGTGATTGATGAAAAATCAAACCAAGTTTCTGATAAAATGTTTGAGTGTCTTGAGCATTTGGCCAACAAGCAAAGCATGCATGGTGCTGTGTTAACCAAATCTGTGATTGATGAAAAGTTAAATCAAGTTTCTGACAAAATGACTGAGAGTCCAGAGTGTTTGGACAACAGGCAAAGCCTGCATGGTGATGTGCTAACCAATTCTGTGATTGATGAAAAAACAAACCAAGTATATGAAAAAATGACTGAGAGTCCTGAGCGTTTGGACAAGAAGCAAGGCATGCATGGCGATGTGTTAATCAATTCGGTGATTCGTGAAAACTCAAACCATGTTTCTCGCAAAATGACTGAGAGTTCTCAGTGTTTGGACAACAAGCAAAGTGTAATTGACGAGGTGTTAACCAGTCATGTGATTGATGAAAAATCGAACCAAGTTTCAGACAAAACGACAGAGAGTTCTCAGTGTTTACACAATACACAAAGCATGCCAAGCAATGTGTTAACCAGCTCTGTTATTGATGAAAACTCAAACCAAGGTTCTGGAAAAATTATTAGGGGTGCTGTTATTGCACTGCCTGCACAACGCCAGCGTGATTTGAAAAAGAGTTGTCAAACTGCAGAAGGTTCATGCTCTCATCGGAGTACCTCAGAACAAGACCCCTCTCATTTGTCTAATGACAAATCAGAGATCAAATGTGAGCCTTTTTCTCAGAATGGCCAAAATGTGTCCGTGGAAATAAATAATCCTGTAACTGGCTCTCTTGTTGAGAACCAAATGCTATCTGTTCCAACACAAGTGAACACCACTTCTGCAAATGGACTACAGGATCCAGCTCCAGCATCTGTAGATGTGAAAAATACTGGTTTGAAATGTTCAAAAAGAAACTCTACAGCCACAACATCTATGCAGTTGAGCTGCAAGGGTAAAAAAAGCTCAAAATTATTAAAGAAGAAGTATATGCTAAGGTCATTAGGAAGCAGTGATAGAGCTTTGCGATCAAGGACACGCGAAAAACCTAAACCACCTGAGTCAAATAGCAATTTGGTTGATGCTAATAATGATGGCGTGAAGAATAAAAGGGGGAAGAAGAAGAACAAAAAGAGAGACGGGGAAGGAGTTATTGATGAATTTTCTAGAATAAGAGCTCGCTTAAGATATTTATTGAAACGAGTTAGCTATGAGCAGAACTTGATTGATGCTTATTCTAGTGAGGGCTGGAAAGGATACAGTTTGGAAAAGTTAAAGCCTGAAAAGGAGCTTCAACGGGCTAAGACTGAAATACTTCGACGTAAATTGAAAATGAGGGATCTCTTTCGATATTTGGATTCATTGTGTGCTGAAGGAAGGCTTCCTGAATCTGTGTTTGATTCTGAAGGAGAGATTGACAGTGAGGATATATTCTGTGCAAAATGTAGTTCCAAAGAGTTGAGCACAAACAATGATATAATTCTCTGTGACGGTGCTTGTGAACGTGGATTTCACCAGCTTTGTGTGGATCCTCCTTTGTTAACTGAAAACAGTAATCTCTTGTTTACTGCATTGATTGGTCACTTTGTACTTCCAAGTTGTCTATCATTTATTTATTTGCTGTGGCTTACAGTTCCACCTGGCGATGAGGGTTGGCTATGCCCGGGATGTGATTGCAAAGATGACTGTATTGAACTTGTTAATGACTCCTTAGGAACACGTCTCTCTCTTGAGGATAGCTGGGAGAGGGTTTTTCCAGAAGCAGCTGCAGTTGATGCATTCAATGTGGATCACAACTCAGGACTTCCTTCTGATGATTCTGATGATGATGATTATGATCCTGATGTTAAAGAAGATGTGGAGGCTGAAGGGGGTGAATCAAGTTCTGATGAATCTGAGTATGCTTCTGCTTCTGAGAAATTGGAGGATTCAGGCCATGAGGATCAGTACATGGGCCTTCCTTCTGAAGATTCTGAGGATGATGATTATAATCCTGATGCTCCAGATCAAGACATGAAAGTTGCAGAGGAAAGTTCGAGCTCTGATTTCACATCTGATTCTGAGGATCTTGCTGCTACAATTAATGATAATATGCCCCCAGGACACGGTGAAGATATCACATCTGCATCATTGGATGATGCAAAGAAGTTTAAAGGATCCAGCAAAACAAGTAAAGTCGGTAAGAAGCCATCTATAACTGATGAATTGTCATCTTTACTAGAGGCAGATCCTGGCCAAGAGAGTTACACTCCTGTTTCGGGGAAAAGAAATGTGGAAAGGTTGGACTACAAAAAGCTGTATGATGAGACATACAAAAGTGATACTAGTGATGATGATGAAGACTGGAATGCTACTGCTACCCCAACTAGGAAGAAGAATGTCACTGGTAAATTGACTCCAGTGTCACCAAATAGAAAAGCCTCAAATAATTCTACACATACTCTGAGAAGTGACGGTAAAGCTGAAAAAACAAATAACTCAGCTGCTAAATCACTTGAAGGCTCTGGAAAATCAGGTTCCGGGGAGAAAAAACTAAGATCTTCAACATACAACAGACTTGGAGATGTTGCAATTGAGAGACTTTACAAATCTTTCAAAGAGAATCAGTATCCAGATCGGACCACAAAAGAAAGCTTGGCACAAGAAACAGGACTCACACTTCAGCAGGTAAGTAAATGGTTTGACAACACCAGATGGAGCTTTAGGCATTCATCCCATAAGGAACCCAGGACAGGTGAAAATGCTTTGGCACAGACCACTGATAACATATCTGAAAATGAGGTGGCACCTGCTGGAGAGAACAGGGACAGTGAATTATTCCCCCAAGATGTCACCGGAGAAAACTCAAAAACCCCAAGCTCTAAAAAGAGGAAGGGTATGTCTGAACCCCTGGCATCTGAGTCTCCTCAGAATGCTGATAAAGCATCAAGTCATAAAATGAAGACAAGGAAAAGAAAATGA 3489 0.4096 MQGELEEFTSPNRSASRKMQTPDAGTEQCHLSEKTSQVGSECLDNKQGVPGNVLGSSLIDDQASEKMAKSSECLDNKQSMPSDVLTSSMIDENSNRVAENPELLDDKQSMHSDVLTDSVIDEKSNQVSEKMTDGTQGLGNKKNLQGEVLTNCVVDEKSNEVSEKLIEGPEHLASRQSMHSDDALTNSVIDEKSNQVSDKMFECLEHLANKQSMHGAVLTKSVIDEKLNQVSDKMTESPECLDNRQSLHGDVLTNSVIDEKTNQVYEKMTESPERLDKKQGMHGDVLINSVIRENSNHVSRKMTESSQCLDNKQSVIDEVLTSHVIDEKSNQVSDKTTESSQCLHNTQSMPSNVLTSSVIDENSNQGSGKIIRGAVIALPAQRQRDLKKSCQTAEGSCSHRSTSEQDPSHLSNDKSEIKCEPFSQNGQNVSVEINNPVTGSLVENQMLSVPTQVNTTSANGLQDPAPASVDVKNTGLKCSKRNSTATTSMQLSCKGKKSSKLLKKKYMLRSLGSSDRALRSRTREKPKPPESNSNLVDANNDGVKNKRGKKKNKKRDGEGVIDEFSRIRARLRYLLKRVSYEQNLIDAYSSEGWKGYSLEKLKPEKELQRAKTEILRRKLKMRDLFRYLDSLCAEGRLPESVFDSEGEIDSEDIFCAKCSSKELSTNNDIILCDGACERGFHQLCVDPPLLTENSNLLFTALIGHFVLPSCLSFIYLLWLTVPPGDEGWLCPGCDCKDDCIELVNDSLGTRLSLEDSWERVFPEAAAVDAFNVDHNSGLPSDDSDDDDYDPDVKEDVEAEGGESSSDESEYASASEKLEDSGHEDQYMGLPSEDSEDDDYNPDAPDQDMKVAEESSSSDFTSDSEDLAATINDNMPPGHGEDITSASLDDAKKFKGSSKTSKVGKKPSITDELSSLLEADPGQESYTPVSGKRNVERLDYKKLYDETYKSDTSDDDEDWNATATPTRKKNVTGKLTPVSPNRKASNNSTHTLRSDGKAEKTNNSAAKSLEGSGKSGSGEKKLRSSTYNRLGDVAIERLYKSFKENQYPDRTTKESLAQETGLTLQQVSKWFDNTRWSFRHSSHKEPRTGENALAQTTDNISENEVAPAGENRDSELFPQDVTGENSKTPSSKKRKGMSEPLASESPQNADKASSHKMKTRKRK* 1163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4190 1162 Gene3D - 1023 1091 - -
Amo19g4190 1162 ProSiteProfiles Zinc finger PHD-type profile. 652 736 IPR019787 -
Amo19g4190 1162 SMART PHD_3 654 734 IPR001965 -
Amo19g4190 1162 MobiDBLite consensus disorder prediction 1 43 - -
Amo19g4190 1162 MobiDBLite consensus disorder prediction 780 804 - -
Amo19g4190 1162 Pfam Homeodomain 1033 1076 IPR001356 GO:0003677
Amo19g4190 1162 MobiDBLite consensus disorder prediction 1 82 - -
Amo19g4190 1162 SUPERFAMILY FYVE/PHD zinc finger 644 690 IPR011011 -
Amo19g4190 1162 MobiDBLite consensus disorder prediction 1078 1162 - -
Amo19g4190 1162 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 426 1134 - -
Amo19g4190 1162 ProSitePatterns Zinc finger PHD-type signature. 655 733 IPR019786 -
Amo19g4190 1162 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 647 697 IPR013083 -
Amo19g4190 1162 SMART HOX_1 1022 1084 IPR001356 GO:0003677
Amo19g4190 1162 MobiDBLite consensus disorder prediction 328 348 - -
Amo19g4190 1162 MobiDBLite consensus disorder prediction 963 1010 - -
Amo19g4190 1162 MobiDBLite consensus disorder prediction 387 416 - -
Amo19g4190 1162 MobiDBLite consensus disorder prediction 334 348 - -
Amo19g4190 1162 CDD homeodomain 1028 1081 IPR001356 GO:0003677
Amo19g4190 1162 MobiDBLite consensus disorder prediction 1040 1063 - -
Amo19g4190 1162 MobiDBLite consensus disorder prediction 853 868 - -
Amo19g4190 1162 ProSiteProfiles 'Homeobox' domain profile. 1020 1080 IPR001356 GO:0003677
Amo19g4190 1162 MobiDBLite consensus disorder prediction 390 405 - -
Amo19g4190 1162 MobiDBLite consensus disorder prediction 1087 1103 - -
Amo19g4190 1162 MobiDBLite consensus disorder prediction 809 829 - -
Amo19g4190 1162 SUPERFAMILY Homeodomain-like 1026 1082 IPR009057 -
Amo19g4190 1162 MobiDBLite consensus disorder prediction 772 886 - -
Amo19g4190 1162 MobiDBLite consensus disorder prediction 933 962 - -
Amo19g4190 1162 MobiDBLite consensus disorder prediction 516 530 - -
Amo19g4190 1162 MobiDBLite consensus disorder prediction 512 558 - -
Amo19g4190 1162 CDD PHD_PRHA_like 654 733 IPR045876 -
Amo19g4190 1162 MobiDBLite consensus disorder prediction 914 1027 - -
Amo19g4190 1162 PANTHER HOMEOBOX PROTEIN HAT3.1 426 1134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4190 Amo-Chr19 158549471 158556111 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4190 511 1134 Homeobox Transcription Factor Family AT3G19510 42.355 6.80e-123 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Amo19g4190 Homeodomain 1e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4190 - - aip:107617775 1835.08