Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4168 ATGGCAATCCAACATCACAATGACCAACTAGAACAACAACATCACCACCAACACGCTGTCCTCGATGCCCTTTACTGCGACGAAGGAAAGTGGGAAGAAGAGTTCTCAGGAGAGAGTGATGTCACAACAAACCACGACCATGAAGAAGATGATGATGGTGTCAACTTCAACTTGAACTTCCATTCCCTTGACCCTCTGCTCTTGTTGGAGCAGGACATGTTCTGGGAAGACGAAGAGCTCAACACTCTCTTCTCCAAAGAGAAGCTTGACCACGAAGCCTATTATAACAATGGCGATGATGTCATGAAAGCATTGGATCCTTCTTCTTCTTCTTCTGTGTGTATGGCTCGCCGTGAAGCAGTTGAATGGATGCTTAAGGTGAATGCTCATTACGGGTTCTCAGCTCTGACGGCAACACTTGCCGTTACTTATCTGGATAGGTTCCTCTTGAGCTTCCATTTTCAAAGGGAGAAGCCATGGATGATCCAACTTGCCTCTGTCACTTGCATCTCTTTGGCTGCTAAAGTTGAAGAAACTCAAGTGCCTCTTCTCTTGGACCTTCAAGTAGAAGATGCAAAATATGTGTTTGAGGCAAAGACTATTCAGAGAATGGAGCTTCTGATTCTGTCCACCTTGAATTGGAAGATGCACCCTGTGACCCCACTCTCATTTCTAGATCACATTATAAGGAGGTTGGGACTCAAAACACATCTTCACTGGCAGTTCCTCAAGCGTTGTGAGAATCTTCTTCTGTCTTTGCTATTGGATTCAAGATTTGTTGGTTGTCTTCCTTCTGTATTGGCCACTGCAACAATGCTGAATGTAATAGGCCAGATTCATCACAACACTGAGGGAGTGGAATACAAAAACCAGCTTCTTAGTGTTCTCAACATGAACAAGGAGAAGGTAGATGAATGTTATAAAGTCATAGTGGAGGTGACAAATAATAATAATAATGGTGGGAGGGGGAAGAAGAGAAAGTATGAGGAAATCCCTGGTAGCCCAAGTGGCGTAATTGATGCAGTGTTCAGCTCTGATGATGGTTCCAACGATTCGTGGGAAGTGGTGGTGGGGTCATCACCATCACAAGAGGAGCCTCAGCCTCAGCCTCTCTTGAAGAACAAGAAACAACAATTGAAATTGTCATCACTTAACAGGGTCATTGTCGGAATTGTTGGCACCACCCCATAA 1191 0.445 MAIQHHNDQLEQQHHHQHAVLDALYCDEGKWEEEFSGESDVTTNHDHEEDDDGVNFNLNFHSLDPLLLLEQDMFWEDEELNTLFSKEKLDHEAYYNNGDDVMKALDPSSSSSVCMARREAVEWMLKVNAHYGFSALTATLAVTYLDRFLLSFHFQREKPWMIQLASVTCISLAAKVEETQVPLLLDLQVEDAKYVFEAKTIQRMELLILSTLNWKMHPVTPLSFLDHIIRRLGLKTHLHWQFLKRCENLLLSLLLDSRFVGCLPSVLATATMLNVIGQIHHNTEGVEYKNQLLSVLNMNKEKVDECYKVIVEVTNNNNNGGRGKKRKYEEIPGSPSGVIDAVFSSDDGSNDSWEVVVGSSPSQEEPQPQPLLKNKKQQLKLSSLNRVIVGIVGTTP* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4168 396 Pfam Cyclin, N-terminal domain 115 216 IPR006671 -
Amo19g4168 396 Pfam Cyclin, C-terminal domain 219 328 IPR004367 -
Amo19g4168 396 PANTHER CYCLIN D3.1 PROTEIN 51 366 - -
Amo19g4168 396 PANTHER CYCLINS 51 366 IPR039361 -
Amo19g4168 396 SUPERFAMILY Cyclin-like 102 217 IPR036915 -
Amo19g4168 396 Gene3D - 115 217 - -
Amo19g4168 396 SUPERFAMILY Cyclin-like 201 315 IPR036915 -
Amo19g4168 396 CDD CYCLIN 117 209 IPR013763 -
Amo19g4168 396 SMART cyclin_7 122 210 IPR013763 -
Amo19g4168 396 MobiDBLite consensus disorder prediction 350 376 - -
Amo19g4168 396 ProSitePatterns Cyclins signature. 117 148 IPR006671 -
Amo19g4168 396 SMART Cyclin_C_2 219 347 IPR004367 -
Amo19g4168 396 Gene3D - 218 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4168 Amo-Chr19 158217061 158218951 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4168 1 313 Core Cell Cycle Gene Families AT4G34160 54.633 8.84e-107 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4168 K14505 - gmx:547740 501.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g4168 19 158217061 158218951 Amo19g4168 19 158217061 158218951 ECH
Amo17g2839 17 130396177 130397526 Amo19g4168 19 158217061 158218951 ECH
Amo05g0654 05 7749715 7750786 Amo19g4168 19 158217061 158218951 PCT