Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4155 ATGAGGAAAATGATGGCGGATAAAGCTTTGGTGAGGAGGCTTTCCGCTTGTGAGACAATGGGCTATGCAACAACCATTTGCAGTGATAAGACTGGCACGTTGACCATGAATCAGATGACTGTGGTGGAGGCTTATGCTGGTGGGAAGAAGAATGATCCTCCTGGTAACAAGTCAGAGCTCTCTCCCAAGCTCCACTCTTTGCTCATTGAAGGTGTTGCACAGAACACTAATGGCAGTGTTAACGATGTTGAGGAATCATCAATTATTCACGTTTTCCCTTTCAATTCTGAGAAAAAACGAGCCGGAGTTGCAGTACAAACGGCTGACTCTGAAGTTCACATACACTGGAAAGGTGCTGCTGAGATTGTCCTAGCCTGCTGTACACGAACATTTGAAAAGGAGAATGTTCCAGCCACTGAAGAAGAACGGGTTCACTGGTCTTTACCAGAAGATACTCTTGTTTTGTTAGCTATTGTTGGTCTGAAGGATCCTTGTCGACCTGGAGTCAAAGATTCAGTGGAGCTTTGCCAAAAATCTGGGGTTAAGGTAAAAATGGTCACTGGTGACAATGTCAAAACTGCAAAAGCAATTGCTGTGGAGTGGAATACTTAA 612 0.4444 MRKMMADKALVRRLSACETMGYATTICSDKTGTLTMNQMTVVEAYAGGKKNDPPGNKSELSPKLHSLLIEGVAQNTNGSVNDVEESSIIHVFPFNSEKKRAGVAVQTADSEVHIHWKGAAEIVLACCTRTFEKENVPATEEERVHWSLPEDTLVLLAIVGLKDPCRPGVKDSVELCQKSGVKVKMVTGDNVKTAKAIAVEWNT* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4155 203 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 33 169 IPR023299 GO:0000166
Amo19g4155 203 Gene3D - 145 203 IPR023214 -
Amo19g4155 203 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 87 200 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo19g4155 203 SUPERFAMILY HAD-like 24 201 IPR036412 -
Amo19g4155 203 Gene3D - 67 144 IPR023299 GO:0000166
Amo19g4155 203 Gene3D - 1 48 - -
Amo19g4155 203 PRINTS P-type cation-transporting ATPase superfamily signature 27 41 - -
Amo19g4155 203 PRINTS P-type cation-transporting ATPase superfamily signature 157 168 - -
Amo19g4155 203 PRINTS P-type cation-transporting ATPase superfamily signature 179 189 - -
Amo19g4155 203 PANTHER CALCIUM-TRANSPORTING ATPASE 1 80 - -
Amo19g4155 203 PANTHER CALCIUM-TRANSPORTING ATPASE 84 133 - -
Amo19g4155 203 PANTHER CALCIUM-TRANSPORTING ATPASE 131 200 - -
Amo19g4155 203 ProSitePatterns E1-E2 ATPases phosphorylation site. 29 35 IPR018303 -
Amo19g4155 203 PANTHER CATION TRANSPORTING ATPASE 84 133 - -
Amo19g4155 203 PANTHER CATION TRANSPORTING ATPASE 131 200 - -
Amo19g4155 203 PANTHER CATION TRANSPORTING ATPASE 1 80 - -
Amo19g4155 203 Pfam Cation transport ATPase (P-type) 84 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4155 Amo-Chr19 158074343 158075135 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4155 1 200 Primary Pumps ATPases AT5G57110 54.244 8.83e-84 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4155 K01537 - ahf:112750285 351.288