Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4120 ATGGAGAAGGTCTGTGAATTCTGCACGGATTTGAGGCCACTTGTATATTGTAAGGCTGATGCAGCTTATCTGTGTCTATCCTGTGATTCAAAGGTGCATTTTGCGAATGCACTGTCCAGCCGGCATCTTCGGACCCTTGTTTGTAACTCTTGTAGGTACCATCTTGCTTATGTGCAGTGTTTGGATCACAAAATATTAATTTGTCAAGAGTGTGATCAGAAGCTGCACGATGTCTCTTTACCACATCGAAAACGAGCTATCAGAAGTTTCATGGGTTGCCCTTCTGCTAAAGACTTTGCGATGCTATGGTGTTTTGGCTTGAATGAGATGGAAAACATCACCTGTGAGGATTTGTTTGGATCTGCTTCATGTGTTTCCGCTGATTCAAATATGGCACAAGCCTCTGTACGGGCTAGAAGTCGAATATCATCTAAGGCCAAACTTCATGGGGGATCGAGCAGTCGACAAGGTCAGATATTATACAGTGATCAAGAGCGAAAAAAGATTCTGCAGCAGATTATTGATTTAAAACAGCTTCAGCTAAATGAGAATACTGGTCAAACAATAAAGATAAATGGACCTGAAGAAGAAACAGACTTAACTTCTTCAGCATATCAAACTATCAAGAAATCAGATGAAAAGTTCAATAAGCAAGAACAAAATTCAAAGGATGTTGTGGAAAAAGACAGTCACACAGTGGAGCTGAATCCTGAACCTTTGCCTTCTACGTTTTCTCAGCTTGATAACTTACCTTCAATTGTAGATCTTCCCTTACATGGAGAGTTGTTCTGGACAGGGAAAAGTCCACCCCGAAGTAATCAGTTGTGGTCCCAAAACATACAAGACCTTGGGATATGTGAAGAACTTGTTTGTCGAGATGATTTCAACATACCTGACGTTGATCTAACATTCCAAAACTTTGAGGAACTATTTGGAGATCAAGATCCAGTTAGAGCACTGCTTGATGATAATGATGTTTCCTGCTCCTCTTTAGAGAAGGATATGTCAATTGATAAGTCAGATATTGACAATCTAAGTGCAATAGAGGATTCTTCGGCAGCCATATCGATTACCATCTTGCAATCAGCTCATGAGAACAAGGATATCGATAGTACCAACATCCAGCATTATCCAAGAAGCACAGATCCTCCACACACAATTCGACCATTCGAGTCAACTGTGTCATCGTCTGTTTCAAGATTCTGGGCTGCAAGCAGTCCTACTTATCACAATGACGGTGCCCTTTCTCCCTGCAGTGAAGAGAAAGGCTATTTAGGAAATTCAGCTGAATTGGAGATATCACATATGGAGGCCACACAAAATCTCACTCTCACGTATGAAGAGAAGCCATCTCGACGGAACGAGAAGCAAGTTCGACTCCCATCTGGGAAACCTGGAGCTAATGTAAGAAAGAAGGTGAAAGGCACTGCCAAGGCAGAAAGCTATTGA 1449 0.4168 MEKVCEFCTDLRPLVYCKADAAYLCLSCDSKVHFANALSSRHLRTLVCNSCRYHLAYVQCLDHKILICQECDQKLHDVSLPHRKRAIRSFMGCPSAKDFAMLWCFGLNEMENITCEDLFGSASCVSADSNMAQASVRARSRISSKAKLHGGSSSRQGQILYSDQERKKILQQIIDLKQLQLNENTGQTIKINGPEEETDLTSSAYQTIKKSDEKFNKQEQNSKDVVEKDSHTVELNPEPLPSTFSQLDNLPSIVDLPLHGELFWTGKSPPRSNQLWSQNIQDLGICEELVCRDDFNIPDVDLTFQNFEELFGDQDPVRALLDDNDVSCSSLEKDMSIDKSDIDNLSAIEDSSAAISITILQSAHENKDIDSTNIQHYPRSTDPPHTIRPFESTVSSSVSRFWAASSPTYHNDGALSPCSEEKGYLGNSAELEISHMEATQNLTLTYEEKPSRRNEKQVRLPSGKPGANVRKKVKGTAKAESY* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4120 482 CDD Bbox1_BBX-like 4 47 - -
Amo19g4120 482 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Amo19g4120 482 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 425 - -
Amo19g4120 482 MobiDBLite consensus disorder prediction 212 232 - -
Amo19g4120 482 MobiDBLite consensus disorder prediction 447 482 - -
Amo19g4120 482 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 425 - -
Amo19g4120 482 SMART bboxneu5 1 47 IPR000315 GO:0008270
Amo19g4120 482 SMART bboxneu5 48 87 IPR000315 GO:0008270
Amo19g4120 482 ProSiteProfiles Zinc finger B-box type profile. 43 87 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4120 Amo-Chr19 157671411 157676030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4120 1 333 C2C2-CO-like Transcription Factor Family AT1G68190 38.348 1.19e-60 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4120 - - adu:107467199 922.924