Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4117 ATGGTACTAATTTATGTTTTGCGGTTCTTTTTGGTTTCACATCTACTCCTCAACTCGGGTGTGAATGGGGACCGTGAAGAGTGTCCAGACTCGTTTGATTGTGGAAATCTCGGCTCGTTTCACTTCCCTTTAACCACCGCAGAACGCCCTGACTGTGGTGCACTGGCCATCTATGGTTGCGGCGATGATCATAAGCAACAATCCCATTACTTACTCCTTAGAGGTGAAAAGTTTCCAGTTACACGAATTCGGAAACAAAATTGGTTCACTCCCACTCTTGTGTATGTTATTGACAATCATCTCCACAAATATTTGAAATCAGGGAATTGTAACACCTTTGCCCATAATATTACACTCCCTTCCGTCTCTCCTCTCATTGGTTTCTTCACTATCAGTAACAACATTACTTTGTTCAAATGCAAGAGCAATCTCAACGTCAGCACGCCGCAAACTTACTTTAAAAATTCTACAAGCTGTGACTACGACATCGTTTTCGGCCCTCCTAATTCAGATGATGATGCATCTGTGTCCACGCACCCTTCCATTGCAGGATGCTCAAGTGTAGAGCTTCCCGCAGTGTATGGCCTTCCAATATCTGCAAACCCATTTGCGTTCTTAACTGCAGAAATTCCCATCCAGTTCAATCCATCAGTTAAATGTGCCCAGTGTCGTCATGACAGAAGGGTTCCGCATGGCCAATGTTTCCTTGACAGGGAAGGAAAACCTTACTGCGCTACAAGGAAGGACAAAAAAGGGACTCCAATGCTTGCACTCGCACTAGGTTTAGGTCTTGGACCTTGGATCATATTTGGGTTGATCCTCATTTTAAAAAACCACAAACGGAAGCAAAGTACCGCACACGTCCAACTCCAATCAACAATGGCTTCTGCTGATTCCAGCCATAATCCTGATGTACAGACTGACAGGATCTTCTTTGGGGTGCCGATATACTCTTATAAGGAGCTTCAAGAAGCAACCAACAACTTTGACAACACTAGAAAACTGGGAGATGGAGGCTTTGGCACTGTTTACTATGGAAAACTTGAAGATGGAAGAGAAGTTGCAGTCAAACACCTATTTGATCACAACTACAGGAGAGTGGAGCAGTTTATGAATGAAATTGAGATCCTCACTCGCATGCGCCACAGAAATCTTGTGTCCCTGTATGGCTGCACTTCACGTCACAGCCGTGAGCTACTTCTTGTGTATGAATACATTCCAAATGGCACGGTTGCTTCYCATCTCCATGGTACTTTAGCAAGGGCCGGTTTACTCACTTGGCCTATTCGAATGCAAATCGCCATAGACACTGCTACTGCATTGGCATTTCTCCATATTTCAGATATCATCCACCGTGATGTCAAAACCAACAACATTCTACTTGATATTGATTTTTCAGTTAAGGTAGCAGACTTTGGTCTTTCAAGACTGTTTCCAAACAATGTCACCCATGTCTCCACGGCTCCACAAGGAAGTCCAGAAGTTAAAAGGAAGATAACTATGGTGGCAGAATTGGCTTTCCAGTGTGTGCAAGTGGACAAAGAGCTAAGACCTTCTATGGATGGAGTTSTAAATGCACTCAAGAAAATTGGGAGTGCGMATTCTGAGCCTGAGCATGTAGAGAAAGGAGATGATAGTGCTGTGATCTCWCACRGCGAAGAATTAAATGGGTCGCAGGATTGGAATCAAGTTAGATTCTTAGTGAGAGAGAAGCTAAGGTCTTCACCAAACTCCTTGACTGAGAAATGGTCAAGTGAATCTACTACKCCTAATGCCAGTGCTTAA 1785 0.4364 MVLIYVLRFFLVSHLLLNSGVNGDREECPDSFDCGNLGSFHFPLTTAERPDCGALAIYGCGDDHKQQSHYLLLRGEKFPVTRIRKQNWFTPTLVYVIDNHLHKYLKSGNCNTFAHNITLPSVSPLIGFFTISNNITLFKCKSNLNVSTPQTYFKNSTSCDYDIVFGPPNSDDDASVSTHPSIAGCSSVELPAVYGLPISANPFAFLTAEIPIQFNPSVKCAQCRHDRRVPHGQCFLDREGKPYCATRKDKKGTPMLALALGLGLGPWIIFGLILILKNHKRKQSTAHVQLQSTMASADSSHNPDVQTDRIFFGVPIYSYKELQEATNNFDNTRKLGDGGFGTVYYGKLEDGREVAVKHLFDHNYRRVEQFMNEIEILTRMRHRNLVSLYGCTSRHSRELLLVYEYIPNGTVASHLHGTLARAGLLTWPIRMQIAIDTATALAFLHISDIIHRDVKTNNILLDIDFSVKVADFGLSRLFPNNVTHVSTAPQGSPEVKRKITMVAELAFQCVQVDKELRPSMDGVXNALKKIGSAXSEPEHVEKGDDSAVISHXEELNGSQDWNQVRFLVREKLRSSPNSLTEKWSSESTTPNASA* 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4117 594 ProSiteProfiles Protein kinase domain profile. 329 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g4117 594 Pfam Protein tyrosine and serine/threonine kinase 332 483 IPR001245 GO:0004672|GO:0006468
Amo19g4117 594 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 494 593 IPR044652 -
Amo19g4117 594 Gene3D Transferase(Phosphotransferase) domain 1 406 496 - -
Amo19g4117 594 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 9 493 IPR044652 -
Amo19g4117 594 ProSitePatterns Protein kinases ATP-binding region signature. 335 357 IPR017441 GO:0005524
Amo19g4117 594 ProSitePatterns Serine/Threonine protein kinases active-site signature. 449 461 IPR008271 GO:0004672|GO:0006468
Amo19g4117 594 SUPERFAMILY Protein kinase-like (PK-like) 306 527 IPR011009 -
Amo19g4117 594 PANTHER WALL ASSOCIATED KINASE-LIKE PROTEIN 494 593 - -
Amo19g4117 594 PANTHER WALL ASSOCIATED KINASE-LIKE PROTEIN 9 493 - -
Amo19g4117 594 SMART serkin_6 329 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g4117 594 Gene3D Phosphorylase Kinase; domain 1 300 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4117 Amo-Chr19 157623614 157626138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4117 495 594 Receptor kinase-like Gene Family AT1G25390 39.000 2.16e-13 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Amo19g4117 PK_Tyr_Ser-Thr 5e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4117 - - aip:107616167 954.51