Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4115 ATGACCTCTGCAGCTGCTGCGGTTACTCTGCTGTTAGTAATGGTCACCCTCTACTACACAAGACGGAAGAAGCAAAACCCGAAACACCTTCTGGTTGATGCCTTTCTGGAGAGGCATGGATACCTTCAAATCAAGAGGTACAGCTATTCCGACATGAAGAAAATGACCAACTCCTTCAAAAACAAACTAGGTGCAGGGGGATTTGGCAGTGTATACAAAGGACAATTAAAGGATGGACGACATGTTGCAGTGAAGATCCTAAGTGAATTGAAAGGTGATGGTGAAGATTTCATCAATGAAGTTGTGAGCATGAGCAGAACTTCTCATGTTAACATTGTTGCTCTTCTTGGCTTCTGCTTTSAAGGTTCTAAACAAGSWYTRGTTTATGAMTTTATGCCTAATGGGTCCCTTGAGAAGCTACTCTCTGATGAAMATGACGTGATAGGGGATCGCCAATTAGATTATCAAACTTTATATGATATTGCAATTGGTGTTGCTAAAGGACTAGAGTATCTGCATAAGGGCTGCAATACTAGAATTCTGCATTTTGATATAAAGCCTCATAACATTCTCTTGGATGAGAATTTYTGTCCCAAAATTTCAGACTTTGGACTTGCGAAAGTTTGTACAAGAAAAGAAAGCATGGTATCGATATCTGGTACAAGAGGAACTGCAGGTTATATTGCCCCAGAGGTATTTTCTAGGAATTTYGGTGTAATATCACATAAGTCGGATGTTTATAGTTATGGAATGATGGTTTTAGAGATGGTTGGGAGAAGAAGGAATATCAAGACTGAAGTAGATGCTTCAAGTGAAACGTATTTTCCTTATTGGATATACAATAGACTTGTGTCAAATCAAGAGCTTGGTCTGCGGAATATAAGCAATGAATTTGATAATGAGAAGGTAAGAAAGCTGATAATAGTGAGCTTATGGTGCATTCAAACTAACCCTTCAAATCGGCCATCAATAAGTAAGGTGGTGGAAATGCTAGAAGGAAGAATTGAATTGTTGCAATTGCCGCCTAAACCATTTTGGTTTTCCCCCTCGGCCTCTCCCTAA 1062 0.3917 MTSAAAAVTLLLVMVTLYYTRRKKQNPKHLLVDAFLERHGYLQIKRYSYSDMKKMTNSFKNKLGAGGFGSVYKGQLKDGRHVAVKILSELKGDGEDFINEVVSMSRTSHVNIVALLGFCFXGSKQXLVYXFMPNGSLEKLLSDEXDVIGDRQLDYQTLYDIAIGVAKGLEYLHKGCNTRILHFDIKPHNILLDENFCPKISDFGLAKVCTRKESMVSISGTRGTAGYIAPEVFSRNFGVISHKSDVYSYGMMVLEMVGRRRNIKTEVDASSETYFPYWIYNRLVSNQELGLRNISNEFDNEKVRKLIIVSLWCIQTNPSNRPSISKVVEMLEGRIELLQLPPKPFWFSPSASP* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4115 353 ProSitePatterns Serine/Threonine protein kinases active-site signature. 180 192 IPR008271 GO:0004672|GO:0006468
Amo19g4115 353 Gene3D Phosphorylase Kinase; domain 1 35 131 - -
Amo19g4115 353 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 5 353 - -
Amo19g4115 353 ProSitePatterns Protein kinases ATP-binding region signature. 63 85 IPR017441 GO:0005524
Amo19g4115 353 Gene3D Transferase(Phosphotransferase) domain 1 132 343 - -
Amo19g4115 353 SUPERFAMILY Protein kinase-like (PK-like) 41 332 IPR011009 -
Amo19g4115 353 ProSiteProfiles Protein kinase domain profile. 57 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g4115 353 SMART serkin_6 57 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g4115 353 Pfam Protein tyrosine and serine/threonine kinase 59 331 IPR001245 GO:0004672|GO:0006468
Amo19g4115 353 PANTHER RUST RESISTANCE KINASE LR10-RELATED 5 353 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4115 Amo-Chr19 157567298 157568359 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4115 4 345 Receptor kinase-like Gene Family AT4G18250 53.143 3.44e-128 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Amo19g4115 PK_Tyr_Ser-Thr 9.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4115 - - ahf:112712060 683.715