Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4114 ATGTACCGTTGTGTTATCATYAGCATCATCCTCTACTSTGTGTTGAGCAGAACCACTTTGTGCAGTTATGTGGATCCACAGTTTGAAGCATGTAAACCCCAAACATGCGGCAACCAATCCATAAGCTACCCTTTCTACATCCAATACAAGCAGGAACCTTTCTGTGGGTACCCTGGTTTTGGCATCTCTTGTGATAGTAATGGCTTCCCAGTTCTCACTCTCTCTTATACTCCTTACATCATCCATCAAATATTCTACCACAACCAATCACTCAGAGTCTCCAATGCTGCCTTTTCATCAACCAACACCACCACAGCTGATTATTGTATTTCCCTTACACGGAACCTCACCCTTCCCTCAACCAAGATCTTCACTCTTGTTCATCAGAATTATAATAAGGACATCTTACTGTTCTTCGGCTGTAACCTGTCATCCCTGCCCACAGAGTCGACAAATTACAGAATTGGGTGTTCTGAAGCGAACAACAAAACGGGTGGTTCGTTTCTGGCATTGTATAAGGACGATGTCAAAACGGTAAGCTCGGTGTCTAAGAGTTGCGGGAGGAGCGGAGAGGTGGTGCAGGCGGGGGTGGAAGAGAGTGAAGGAGGAGGGATACAAGAGGCGCTGAGGAGAGGGTTCATGCTGAATTGGAATGCGAGTGATTGTAAGCCGTGCAGTAGCAGCGGAGGAAGGTGTGGCTTCAATGTAACTATGTATTTTTTCCAGTGTTACTGCACTGATAGAATTCATGCTTCCAGATGTGTTATTCCAGATGGTAGAAGCAAGGCTTCCATGAAGATTGGACTTGCACTCGGACTAGCCTTTGCAGCTGCTGCAGTTATTCTGCTGTTAGTAATGGTCACCTACTACACAAGATGGAAGAAGGAAAACTCAAAACACCACCTGGTTGATGCCTTTTTGGAGAGACATGGACACCTTCAAATCAAGAGGTACAGCTATTCCGAGATGAAGAAAGTGACCAATTCCTTCAAAAACAAACTAGGCCAAGGGGGGTTTGGCAGTGTATACAAAGGACAATTACAGGAYGGACGACATGTAGCAGTGAAGATCCTAAGTGAACTGAAAGGTGATGGTGATGATTTCATCAATGAAGTTGCTAGTATGAGCAGAACCTCTCACGTTAACATTATTGCTCTTCTTGGATTCTGCTTTCAAGGTTCCAAACGAGCTTTGGTTTATGAATTTATGCCCAATGGGTCACTTGAGAAGTTAATCTATGAAGAAAATGCTGTGATAGGGGATCGCCAATTGGATTGCCAGACTTTATATGATATTGCAATTGGTGTTGCCCGAGGACTTGAATATTTGCACAAGGGCTGCAATACTAGAATCTTGCATTTTGACATTAAGCCTCATAACATTCTATTAGATGAAAATTTCCTACCCAAAATTTCAGACTTYGGACTTGCAAAAATTTGCACAAKAAAAGAAAGTATAGTATCAATATTTGGTGCTAGAGGAACTGYAGGTTATATTGCCCCGGAGGTATTTTCTAGAAACTTTGGTGTAGTATCACATAAGTCWGATGTTTATAGTTATGGAATGATGGTCTTAGAAATGGTTGGAAGAAGAAAGAATATCAAGGCTGAAGTTGATGCATCGARTGAGATATATTTTCCTTAYTGGATACACAATAGACTTGTATCAAATCAAGAGCTTGGTCTGCAAAATATAAGAAATGAATATGATAATGAGATGGTCAGAAAGATGACAATAGTGAGTTTATGGTGCATTCAAACCAAGCCTTCAACTCGACCATCAATCAGTAAAGTGGTGGAAATGTTGGAAGGAAGAACTGAGTTGTTGCAATTGCCTCCTAAACCATATTGGTTTTCTCCTTCAAATTCTCCCTGA 1875 0.4149 MYRCVIISIILYXVLSRTTLCSYVDPQFEACKPQTCGNQSISYPFYIQYKQEPFCGYPGFGISCDSNGFPVLTLSYTPYIIHQIFYHNQSLRVSNAAFSSTNTTTADYCISLTRNLTLPSTKIFTLVHQNYNKDILLFFGCNLSSLPTESTNYRIGCSEANNKTGGSFLALYKDDVKTVSSVSKSCGRSGEVVQAGVEESEGGGIQEALRRGFMLNWNASDCKPCSSSGGRCGFNVTMYFFQCYCTDRIHASRCVIPDGRSKASMKIGLALGLAFAAAAVILLLVMVTYYTRWKKENSKHHLVDAFLERHGHLQIKRYSYSEMKKVTNSFKNKLGQGGFGSVYKGQLQDGRHVAVKILSELKGDGDDFINEVASMSRTSHVNIIALLGFCFQGSKRALVYEFMPNGSLEKLIYEENAVIGDRQLDCQTLYDIAIGVARGLEYLHKGCNTRILHFDIKPHNILLDENFLPKISDFGLAKICTXKESIVSIFGARGTXGYIAPEVFSRNFGVVSHKSDVYSYGMMVLEMVGRRKNIKAEVDASXEIYFPYWIHNRLVSNQELGLQNIRNEYDNEMVRKMTIVSLWCIQTKPSTRPSISKVVEMLEGRTELLQLPPKPYWFSPSNSP* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4114 624 Pfam Wall-associated receptor kinase C-terminal 175 247 IPR032872 -
Amo19g4114 624 Pfam Protein kinase domain 331 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g4114 624 Gene3D Phosphorylase Kinase; domain 1 305 402 - -
Amo19g4114 624 ProSitePatterns Protein kinases ATP-binding region signature. 334 356 IPR017441 GO:0005524
Amo19g4114 624 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 11 624 - -
Amo19g4114 624 Pfam Wall-associated receptor kinase galacturonan-binding 31 94 IPR025287 GO:0030247
Amo19g4114 624 SMART serkin_6 328 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g4114 624 Gene3D Transferase(Phosphotransferase) domain 1 403 614 - -
Amo19g4114 624 ProSitePatterns Serine/Threonine protein kinases active-site signature. 451 463 IPR008271 GO:0004672|GO:0006468
Amo19g4114 624 PANTHER RUST RESISTANCE KINASE LR10-RELATED 11 624 IPR045874 GO:0004672
Amo19g4114 624 SUPERFAMILY Protein kinase-like (PK-like) 311 603 IPR011009 -
Amo19g4114 624 ProSiteProfiles Protein kinase domain profile. 328 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4114 Amo-Chr19 157559167 157562041 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4114 24 615 Receptor kinase-like Gene Family AT5G38260 41.244 6.63e-148 440
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Amo19g4114 Pkinase 4.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4114 - - ahf:112712060 1219.91