Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4085 ATGGGGTCTTTTGAACGACAAGATGGGAGTCTTGTTGCTGGATCTGCAGAGGAATTCGTCAACAAAGTTGCAAGCATTAGTTGGACATCTCATGTTAACATTGTTATTCTTGTGGGATTTTGTTTTCAAGGTTCCAAACGAGCTCTAATCTATGAATTTATGCCTAATGGATCCCTTGAAAAGTTCCTACGTGAGGAAAATTCAACTACAGTTGGTCGCCAATTGGATCCATTGCTCTATATGACATTGCAGTTGGTGTCGCACGTGGATTAA 273 0.4066 MGSFERQDGSLVAGSAEEFVNKVASISWTSHVNIVILVGFCFQGSKRALIYEFMPNGSLEKFLREENSTTVGRQLDPLLYMTLQLVSHVD* 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4085 90 SUPERFAMILY Protein kinase-like (PK-like) 15 70 IPR011009 -
Amo19g4085 90 Pfam Protein tyrosine and serine/threonine kinase 16 71 IPR001245 GO:0004672|GO:0006468
Amo19g4085 90 Gene3D Transferase(Phosphotransferase) domain 1 5 89 - -
Amo19g4085 90 PANTHER - 13 80 - -
Amo19g4085 90 PANTHER RUST RESISTANCE KINASE LR10-RELATED 13 80 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4085 Amo-Chr19 157243619 157243956 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4085 12 90 Receptor kinase-like Gene Family AT5G39030 47.253 4.58e-21 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Amo19g4085 PK_Tyr_Ser-Thr 1.7e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4085 - - sly:101268684 97.4413