Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4062 ATGAGTCCGTCGAGTAAGAACGTGGCAAACGCCGTCGGTGGCAAAACGGCAAGAGCGTGCGATAGCTGCATAACGAAGCGAGCACGGTGGTACTGTGCTGCCGATGATGCTTTCCTCTGCCAAGCATGTGACTCTTCTGTTCACTCCGCTAACCCACTCGCTCGCAGGCATCAGAGGCTGCGCTTGAAARCCGCAACTTTGGACCCTCTCAACACTACCTCTACCTGTGCSCCTACGTGGCACCATGGCTTCACAAAGAAAGCTCGCACGCCCCGAAACGGTGGTAAGACCAATCATTCGTCTTCTTCAACTCGTCCAACATCCAAGTCTTGTTGGAGCAGCCGCAACAACAACCAGCAGCCTTTTCATCTGGTGCCGGAAGAGGGCGAGGGCTCCGATGAAGTGAATTCCCATGAAGACAACGAGGAGCAGCTTCTTTATAGGGTTCCTGTATTCGATCCCTTTGTAGCCGAGCTATGCAGTCCTGCTGAGAATAATAACAAGAAGGAGAGCGAAGAGAGCAAGGGCTCCTTTGGTTCTCACTTGCATGGCTTTCTTCCATCGGAAGCTGATCTTGCTGAGTTTGCGGCTGATGTGGAGAGCTTGCTGGGTAGGGGAATGGAGAACGAGTGCGTTGGGATGGAACACCTTGGTCTTATTGATAACAATAATAATAATAATAAGGTAGTGAAGGTGGAAATGGAACAGGAACAGGAACACATGGATGCTACCTGTAGTAGTTGCAAGCTCGAGGAGGGAGATAATCACATGATGATGATGGAGATTGGAAGAGAAACGGCGTTTCAGTTTAGCTTTGACTACGACGAATCTCATGAAACTGAAGAGATAGATAAGGAGAAGGTCAAAGAGAAAGAAGACGATGATGACGACGATGAAGATGCAATTAATAAGAAGAGGAAGATATTGCTGCAGCTAGATTACGAGGGAGTAATCAATGCGTGGGGTGGTAGTCATAAATCTCCATGGACTACAGGTCACAAACCAAACTTGGACCTCCATGATTGCTGGCCTCATACCATGGCAACAGGGGGAACAGAGCTTCATCATGGTTATGGTGAATTGATGATTGGATTGGGGTGTAACCCATCATCGGTAATATTGGGAGACGGGGGTAGAGAGGCAAGAGTGTCAAGGTACAGAGAGAAGCGCCGAACAAGGTTGTTCTCCAAGAAAATAAGGTACGAGGTTAGGAAATTGAATGCAGAGAAGAGGCCCAGAATGAAAGGTAGATTCGTCAAGAGGGCTTCATTTGCCGCACCATTTCCGTTGATTGCTTAA 1299 0.4827 MSPSSKNVANAVGGKTARACDSCITKRARWYCAADDAFLCQACDSSVHSANPLARRHQRLRLKXATLDPLNTTSTCAPTWHHGFTKKARTPRNGGKTNHSSSSTRPTSKSCWSSRNNNQQPFHLVPEEGEGSDEVNSHEDNEEQLLYRVPVFDPFVAELCSPAENNNKKESEESKGSFGSHLHGFLPSEADLAEFAADVESLLGRGMENECVGMEHLGLIDNNNNNNKVVKVEMEQEQEHMDATCSSCKLEEGDNHMMMMEIGRETAFQFSFDYDESHETEEIDKEKVKEKEDDDDDDEDAINKKRKILLQLDYEGVINAWGGSHKSPWTTGHKPNLDLHDCWPHTMATGGTELHHGYGELMIGLGCNPSSVILGDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRASFAAPFPLIA* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4062 432 MobiDBLite consensus disorder prediction 163 183 - -
Amo19g4062 432 Pfam CCT motif 379 421 IPR010402 GO:0005515
Amo19g4062 432 Pfam B-box zinc finger 17 59 IPR000315 GO:0008270
Amo19g4062 432 CDD Bbox1_BBX-like 19 62 - -
Amo19g4062 432 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 5 426 - -
Amo19g4062 432 MobiDBLite consensus disorder prediction 273 300 - -
Amo19g4062 432 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 5 426 - -
Amo19g4062 432 MobiDBLite consensus disorder prediction 273 290 - -
Amo19g4062 432 ProSiteProfiles CCT domain profile. 379 421 IPR010402 GO:0005515
Amo19g4062 432 ProSiteProfiles Zinc finger B-box type profile. 15 62 IPR000315 GO:0008270
Amo19g4062 432 MobiDBLite consensus disorder prediction 78 144 - -
Amo19g4062 432 MobiDBLite consensus disorder prediction 127 144 - -
Amo19g4062 432 SMART bboxneu5 15 62 IPR000315 GO:0008270
Amo19g4062 432 MobiDBLite consensus disorder prediction 94 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4062 Amo-Chr19 156899781 156901494 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4062 6 421 C2C2-CO-like Transcription Factor Family AT1G25440 46.742 2.88e-107 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Amo19g4062 CCT 1.4e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4062 - - cam:101499877 457.603