Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4042 ATGAGTCCGTCGGGTAAGAACGTGGCAAACGCCGTCGGTGGCAAAACGGCAAGAGCGTGCGATAGCTGCATAACGAAGCGAGCACGGTGGTACTGTGCTGCCGATGATGCTTTCCTCTGCCAAGCATGTGACTCTTCTGTTCACTCCGCTAACCCACTCGCTCGCAGGCATCAGAGGCTGCGCTTGAAAACCGCAACTTTGGACCCTCTCAACACTACCTCTACCTGTGCACCTACGTGGCACCATGGCTTCACAAAGAAAGCTCGCACGCCCCGAAACGGTGGTAAGACCAATCATTCGTCTTCTTCAACTCGTCCAACATCCAAGTCTTGTTGGAGCAGCCGCATCAACAACCAGCAGCCTTTTCATCTGGTGCCGGAAGAGGGCGAGGGCTCCGATGAAGTGAATTCCCATGAAGAGAACGAGGAGCAGCTTCTTTATAGGGTTCCTGTATTCGATCCCTTTGTAGCCGAGCTATGCAGTCCTGCTGAGAATAATAACAAGAAGGAGAGCGAAGAGAGCAAGAGCTCCTTTGGTTCTCACTTGCATGGCTTTCTTCCATCGGAAGCTGAGCTTGCTGAGTTTGCGGCTGATGTGGAGAGCTTGTTGGGTAGGGGAATGGAGAACGAGTGCGTTGGGATGGAACACCTTGGTCTTATTGATAATAATAATAATAAGGTAGTGAAGGTGGAAATGGAACAGGAACAGGAACACATGGATGCTACCTGTAGTAGTTGCAAGCTCGAGGAGGGAGATAATGACATGATGATGATGGAGATTGGAAGAGAAACGGCGTTTCAGTTGAGCTTTGACTACGACGAATCTCATGAAACTGAAGAGATAGATAAGGAGAAGGTCAATGATGATGAAGATGCAATTAATAAGAAGAGGAAGATATTGCTGCAGCTAGATTACGAGGGAGTAATCAATGCGTGGGGTGGTAGCCATAAATCTCCATGGACTACAGGTCACAAACCAAACTTGGACCTCCATGATTGCTGGCCTCATACCATGGCAACAGGGGGAACAGAGCTTCATCATTGTTATGGTGAATTGATGATTGGATTAGGGTGTAACCCATCATCGGTAATATTGGGAGACGGGGGTAGAGAGGCAAGAGTGTCAAGGTACAGAGAGAAGCGCCGAACAAGGTTGTTCTCCAAGAAAATAAGGTACGAGGTTAGGAAATTGAATGCAGAGAAGAGGCCCAGAATGAAAGGTAGATTCGTCAAGAGGGCTTCATTTGCCGCACCATTTCCGTTGATTGCTTAA 1272 0.4843 MSPSGKNVANAVGGKTARACDSCITKRARWYCAADDAFLCQACDSSVHSANPLARRHQRLRLKTATLDPLNTTSTCAPTWHHGFTKKARTPRNGGKTNHSSSSTRPTSKSCWSSRINNQQPFHLVPEEGEGSDEVNSHEENEEQLLYRVPVFDPFVAELCSPAENNNKKESEESKSSFGSHLHGFLPSEAELAEFAADVESLLGRGMENECVGMEHLGLIDNNNNKVVKVEMEQEQEHMDATCSSCKLEEGDNDMMMMEIGRETAFQLSFDYDESHETEEIDKEKVNDDEDAINKKRKILLQLDYEGVINAWGGSHKSPWTTGHKPNLDLHDCWPHTMATGGTELHHCYGELMIGLGCNPSSVILGDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRASFAAPFPLIA* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4042 423 Pfam B-box zinc finger 17 59 IPR000315 GO:0008270
Amo19g4042 423 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 5 417 - -
Amo19g4042 423 Pfam CCT motif 370 412 IPR010402 GO:0005515
Amo19g4042 423 ProSiteProfiles Zinc finger B-box type profile. 15 62 IPR000315 GO:0008270
Amo19g4042 423 MobiDBLite consensus disorder prediction 94 113 - -
Amo19g4042 423 CDD Bbox1_BBX-like 19 62 - -
Amo19g4042 423 SMART bboxneu5 15 62 IPR000315 GO:0008270
Amo19g4042 423 ProSiteProfiles CCT domain profile. 370 412 IPR010402 GO:0005515
Amo19g4042 423 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 5 417 - -
Amo19g4042 423 MobiDBLite consensus disorder prediction 78 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4042 Amo-Chr19 156586221 156587857 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4042 6 412 C2C2-CO-like Transcription Factor Family AT1G25440 47.917 2.97e-110 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Amo19g4042 CCT 1.4e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4042 - - cam:101499877 469.159