Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4029 ATGGTAACCGATTCCCACGACTCTCGTCGCAAGCATCGCCGATCCTCCTCTCCGGAAGACGCCGATAGATCCTCGAAGCGCCACAAGCACCGCCACCATAGCCACCGCCATCGCCACTCCACCAAGAAACGCGATGAAGACACCGAATACGATCGCGGAACTCTTGCTAGGATTCCTTCTCCAGCTCCTGTTTCTAACTCTGCTCCGTATAGCTCTCTCCCTGACGACGACGTCGAGGAGGGAGAGATTCTCGAAGAAGGTGAGATTGGAAAAAAGCAGACAGAATCTGATGCAGAGCCTGGTGAAATTGAGCTGTCAGGAAATCGAGATTCTCGATCCGATAACAAAATTCCGGGACCTGTCACAAAAAATTCAAAAACTGGAAAGGAGGACAGAAGTCATGGTAAATATGTTAGTCCTGCATTGGATACTGCAGACAAGCACCCTGGACTTCATGATGACTATGGTTCTCCTAACCAGTCAAGCCCTGAGCTTAAAGGTGGAAAGAATGCTAGAGATACTAAAGATGGTTTGGGTAATGGGTATTTGAACCCTAAATCATCCAAAGAAGATAAGAAGCAGAATGAGGGCCCTGGACAATTGAGAGGAAATGAGAAACTAAAAGGTGACTATGAAGAGAAAGAGATACAGGCAAATGGAATAAAACATAATTACCATACAAATTCATCATCTGATAGTGAAGGTGAAAAATATAGAATGTTAAGAAGTTCTCCTTCTCATGATAGATGTAGAAGTCGATCAAGATCAAGTGGTCATCCTAGGGACAGATCTCGTTCTCGTAGTATAGCAGATGAATATGCTCATTCCAAGAAAAGGCACTCTAGGGATCAAGGGRCCCTTCATCATAGTGGCAGAGATAAGACTGACTATGAGCATGATGAGGAAGGAATGAGAGCACGTGGAAGGGAGCATGGTCGTGGCAATGCAGACTTGTTGGTAGATGARAGGAGGGGACGTAGTTCCAGGTATCGTAGTCGAGAGTCCCAGGATCGCAGTAGGGACAGTCATGTGGATAGGGATTTATACAGGGAAAAGAAACGAGACGAAYCAAGCAGGAATAGGGAGGTTGATTGGGTGCGTAAAACAGAAAAGGAACGTGAAAGGAGCTATGAGAGGGATAGAAGGGACACAATAAAAGACAGAAGTAGGGAAAGGGAGGAGGATAGGGATAGGAGACGAGAAAAGGAGAGAGGCTGGAGCAGGGAAACAGATTTTGAGAGGGATAGAAGAAGGGGAAAGGAAAGGGACAGGAGTAGGGATAATACAAGGGGTGGTGAGAGAGGAAGAGATTGGGATAGTGAAAGGGATGATAAGAATCGGGAAAGAGATCACATTAAGGAGAGGGAGAGGCGAGATGATAGATATAGGCACACTGATAAAGACACCGCATATAATAAGGATAAGCATTTGCGTCATGAGGATGGTGAAGACATTCGAGACAGATATAGAAAACATTCAAGACACGAAGAAACTGAATATCATCGGGAGAGAAACAGGAATTCTGATTCTGTAAAATTTTATAATTCTGCAAGAAGTGCCATGGAAGAGAATGAAAGCAAGCTAGAAAGAGGTGAGGTTGAACAAGATTACTTAGATGAGGATACTCTGCAATTACCAGAGCAAGAAGAGGAAGATCTGAATAGGATTAAGGAGGAAAGTAGACGGAGAAGGGAAGCAATAATGGAGAAATACAAGAAGCAGCATCAGCAAGCAGAACAGGCAGCTGAAAATGAAGGAAAAGACAAGGAATCCGTGGACATTCCTACTGATGTTCCTGAAGCACATGATGGCAAGAATGATGGTATTGATGATGTAGAAACATCATTTGCTGTTGGGAAATKTACTCCTGAAAATTTGAATGMTGCTTCTAAGAAGATATCTGGTGCTGGTGGCCTGGGTGAGGGTACTCCTAAGAGTGAAAGATCAGACGACATGTTTTGTGATGATATATTTGGTGAGACACCAACTGGAGTTCGGAAATCAGGAAAAGGGGATGGTATACTGATTGAGAGGGTTGGCCTACATGACAATTGGGATGACGCAGAGGGGTATTACAGCTATCGTTTTGGTGAAATACTTGATGGCCGATACGAAGTCACTGCTGCACATGGGAGGGGTGTTTTTTCAACAGTGGTTCGGGCAAAGAATCTCAAGACTGGTAATGGTGAGCCAGATGAAGTTGCTATAAAAATCATTCGTAATAATGACACCATGTACAAGGCTGGTATGGATGAGTTGGTCATACTGAAGAAATTAGTAGGTGCAGATCCAGATGATAAGCGTCATTGTGTTCGTTTCCTTTCAAGTTTTGAGTACAGGAATCACCTTTGTTTAGTTTTTGAATCTCTTAATATGAATCTGCGTGAAGTATTAAAGAAGTTTGGTCGCAATATTGGCCTTAGGCTAACAGCTGTGAGAGCATATGCAAAGCAACTATTTATTGCCCTGAAGCATCTTCGGAACTGTGGTGTTCTTCATTGTGATATAAAGCCTGATAATATGTTGGTGAACGAGGCTAAAAATGTCTTGAAGCTTTGCGACTTTGGTAATGCTATGTTTGCTGGTAAGAATGAAGTCACACCATATCTTGTCAGTCGGTTTTATCGGGCCCCTGAAATAATTCTTGGCTTGCAATATGATCATCCGTTGGATATTTGGTCAGTAGGCTGTTGTTTGTATGAGCTCTATACAGGGAAAGTTCTTTTTCCAGGTCTTACAAACAATGACATGCTTAGGCTTCACATGGAATTAAAGGGTCCTTTTCCAAAGAAGATGCTGCGTAAGGGAGCATTCACTGACCAACATTTTGATCAGGACCTGACTTTTCTTGCTACTGAAGAGGATCCTGTGACAAAAAAGGATCCAAAGATGTTAGCCAACTTCAAGGATCTCATGGATAAAATTTTTATCTTGGACCCAGACAAGAGGTTGACGGTATCACAAGCACTGAACCACCCGTTTATCACTGGCAAGTGA 2997 0.4318 MVTDSHDSRRKHRRSSSPEDADRSSKRHKHRHHSHRHRHSTKKRDEDTEYDRGTLARIPSPAPVSNSAPYSSLPDDDVEEGEILEEGEIGKKQTESDAEPGEIELSGNRDSRSDNKIPGPVTKNSKTGKEDRSHGKYVSPALDTADKHPGLHDDYGSPNQSSPELKGGKNARDTKDGLGNGYLNPKSSKEDKKQNEGPGQLRGNEKLKGDYEEKEIQANGIKHNYHTNSSSDSEGEKYRMLRSSPSHDRCRSRSRSSGHPRDRSRSRSIADEYAHSKKRHSRDQGXLHHSGRDKTDYEHDEEGMRARGREHGRGNADLLVDERRGRSSRYRSRESQDRSRDSHVDRDLYREKKRDEXSRNREVDWVRKTEKERERSYERDRRDTIKDRSREREEDRDRRREKERGWSRETDFERDRRRGKERDRSRDNTRGGERGRDWDSERDDKNRERDHIKERERRDDRYRHTDKDTAYNKDKHLRHEDGEDIRDRYRKHSRHEETEYHRERNRNSDSVKFYNSARSAMEENESKLERGEVEQDYLDEDTLQLPEQEEEDLNRIKEESRRRREAIMEKYKKQHQQAEQAAENEGKDKESVDIPTDVPEAHDGKNDGIDDVETSFAVGKXTPENLNXASKKISGAGGLGEGTPKSERSDDMFCDDIFGETPTGVRKSGKGDGILIERVGLHDNWDDAEGYYSYRFGEILDGRYEVTAAHGRGVFSTVVRAKNLKTGNGEPDEVAIKIIRNNDTMYKAGMDELVILKKLVGADPDDKRHCVRFLSSFEYRNHLCLVFESLNMNLREVLKKFGRNIGLRLTAVRAYAKQLFIALKHLRNCGVLHCDIKPDNMLVNEAKNVLKLCDFGNAMFAGKNEVTPYLVSRFYRAPEIILGLQYDHPLDIWSVGCCLYELYTGKVLFPGLTNNDMLRLHMELKGPFPKKMLRKGAFTDQHFDQDLTFLATEEDPVTKKDPKMLANFKDLMDKIFILDPDKRLTVSQALNHPFITGK* 999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4029 998 MobiDBLite consensus disorder prediction 186 220 - -
Amo19g4029 998 SMART serkin_6 704 995 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g4029 998 MobiDBLite consensus disorder prediction 1 353 - -
Amo19g4029 998 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 284 998 - -
Amo19g4029 998 Coils Coil 204 224 - -
Amo19g4029 998 SUPERFAMILY Protein kinase-like (PK-like) 691 997 IPR011009 -
Amo19g4029 998 MobiDBLite consensus disorder prediction 548 610 - -
Amo19g4029 998 MobiDBLite consensus disorder prediction 26 40 - -
Amo19g4029 998 Pfam Protein kinase domain 706 995 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g4029 998 MobiDBLite consensus disorder prediction 1 25 - -
Amo19g4029 998 MobiDBLite consensus disorder prediction 229 353 - -
Amo19g4029 998 ProSitePatterns Serine/Threonine protein kinases active-site signature. 831 843 IPR008271 GO:0004672|GO:0006468
Amo19g4029 998 PANTHER DUAL SPECIFICITY PROTEIN KINASE 284 998 - -
Amo19g4029 998 MobiDBLite consensus disorder prediction 417 657 - -
Amo19g4029 998 MobiDBLite consensus disorder prediction 417 509 - -
Amo19g4029 998 ProSiteProfiles Protein kinase domain profile. 704 995 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g4029 998 MobiDBLite consensus disorder prediction 85 111 - -
Amo19g4029 998 CDD STKc_PRP4 703 995 IPR044092 GO:0004674|GO:0006468|GO:0045292
Amo19g4029 998 Coils Coil 561 588 - -
Amo19g4029 998 Gene3D Phosphorylase Kinase; domain 1 674 763 - -
Amo19g4029 998 Gene3D Transferase(Phosphotransferase) domain 1 764 996 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4029 Amo-Chr19 156375346 156381489 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4029 711 992 Core Cell Cycle Gene Families AT1G66750 32.082 1.56e-30 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Amo19g4029 Pkinase 1.2e-48 CL0016