Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amo19g4019 | ATGGCGGGCAAAGAAGAGAATCGAATATTCGTCGGAGGATTGTCATGGGACGTAACGGAGCGTCAGCTCGAGCATGCCTTTGGCCGTTACGGCAAAATTCTCGAATGCCAGATTATGATGGAAAGAGATACAGGCCGTCCACGTGGATTTGGGTTCATTACATTTGGAGACCGTAGGGGAATGGAGGATGCAATCAAGGAAATGCACGGACGAGAAATTGGTGACCGCATCATCTCAGTAAACAAGGCCCAGCCCAAGATGGGAGGTGATGACGTAGACCAAGGTTACAGAAGTGGCTACTCATCAGGAGGTAGAGGAAGCTATGGAGTTGGGGACAGGGTTGGACAAGATGATTGCTTCAAATGTGGGCGTCCAGGGCACTGGGCCCGAGATTGTCCTTTGGCAGGAGGTGGCCGCGGCCGGGGTGGTAGTTCATTTCCCTCACGCCCTAGGTTTGGAGGTGCTGGTGGTGATCGCCTTAGCGGTGAACGTGATCGATACCTTGATGATCGCTATGATGGTGGACGTTACGGGGATAGGGATCGCTTTGATTCCCGAGATTACAAATATGGAAGTCGTGATCGTTATACTAGTGACAGGTATCCAACTAGTGGAGATCGATTTGCAAGTGATCGATATGGAGGAAGCTCAGATTACGCGCAAAATGGTTATGGCAAAGAAAGAGGTTATGACCGGTATGGTGGTCCACGAGGTGTTGGTGACAGGTATGGAAGTGGAATAGCAGCTCGTGACGAAGGAAGGAATTATAGGGGCAGGCCTGGTCCGTATGATCGACCAAGCAGGGGTGCTCGTCCGTCGTCATTTGACCGCTACTGA | 837 | 0.5137 | MAGKEENRIFVGGLSWDVTERQLEHAFGRYGKILECQIMMERDTGRPRGFGFITFGDRRGMEDAIKEMHGREIGDRIISVNKAQPKMGGDDVDQGYRSGYSSGGRGSYGVGDRVGQDDCFKCGRPGHWARDCPLAGGGRGRGGSSFPSRPRFGGAGGDRLSGERDRYLDDRYDGGRYGDRDRFDSRDYKYGSRDRYTSDRYPTSGDRFASDRYGGSSDYAQNGYGKERGYDRYGGPRGVGDRYGSGIAARDEGRNYRGRPGPYDRPSRGARPSSFDRY* | 279 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amo19g4019 | 278 | Gene3D | - | 1 | 114 | IPR012677 | - | |
| Amo19g4019 | 278 | ProSiteProfiles | Zinc finger CCHC-type profile. | 119 | 133 | IPR001878 | GO:0003676|GO:0008270 | |
| Amo19g4019 | 278 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 9 | 78 | IPR000504 | GO:0003723 | |
| Amo19g4019 | 278 | Pfam | Zinc knuckle | 119 | 133 | IPR001878 | GO:0003676|GO:0008270 | |
| Amo19g4019 | 278 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 7 | 85 | IPR000504 | GO:0003723 | |
| Amo19g4019 | 278 | MobiDBLite | consensus disorder prediction | 158 | 201 | - | - | |
| Amo19g4019 | 278 | PANTHER | TRANSFORMER-2-RELATED | 1 | 226 | - | - | |
| Amo19g4019 | 278 | SUPERFAMILY | RNA-binding domain, RBD | 4 | 109 | IPR035979 | GO:0003676 | |
| Amo19g4019 | 278 | PANTHER | GLYCINE-RICH RNA-BINDING PROTEIN RZ1B-LIKE | 1 | 226 | - | - | |
| Amo19g4019 | 278 | SUPERFAMILY | Retrovirus zinc finger-like domains | 104 | 138 | IPR036875 | GO:0003676|GO:0008270 | |
| Amo19g4019 | 278 | MobiDBLite | consensus disorder prediction | 84 | 109 | - | - | |
| Amo19g4019 | 278 | MobiDBLite | consensus disorder prediction | 135 | 278 | - | - | |
| Amo19g4019 | 278 | Gene3D | - | 115 | 151 | - | - | |
| Amo19g4019 | 278 | SMART | rrm1_1 | 8 | 81 | IPR000504 | GO:0003723 | |
| Amo19g4019 | 278 | SMART | c2hcfinal6 | 118 | 134 | IPR001878 | GO:0003676|GO:0008270 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Amo19g4019 | Amo-Chr19 | 156282115 | 156287228 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Amo19g4019 | 9 | 88 | C2H2 Transcription Factor Family | AT2G19380 | 43.750 | 1.22e-14 | 72.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Amo19g4019 | - | - | gmx:100809519 | 466.077 |