Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4015 ATGAAGGTTTTTGTAAAGACTCTGAAGGGCACGCACTTCGAGATTGAAGTGAAGCCCGATGACACGGTTACCGAAGTGAAGAAAAATATAGAAACTGTTCAAGGTGCAAATGTCTACCCTGCTGCACAGCAAATGCTTATTCATCAAGGCAAGGTTCTTAAGGATGGTACTACTTTGGAGGAAAACAAAGTAGCTGAAAATAGTTTCATTGTAATCATGCTTTCTAAGAGTAAGAGCACATCTGGTGAAGGATCTACTGCATCAACAGCACCTTCATCAAAGGCTCCACAGACTAGTGCAACTCCTACTCCTACCCCATCTGTGTCAGTAGCACCTCAAGCTGTTCCTGCCACTGCTGCACCGCCTGCGCCTTCGCCTTCACCTTCGCCTTCACCTGCACCTGCTGCACCTGCACCTGCTGCACCTGCACCTGCACCTGCACCTTCACCTGCTGCAGCTCCTACATCTACAGATACTGCTGTGGTAGGGTCTGATATCTATGGGCAGGCAGCATCCAATCTGGTTGCCGGAAGCAACTTGGAGGGAACAATTCAGCAAATTCTTGATATGGGGGGTGGGAGCTGGGATAGGGACACAGTTATCCGTGCTCTTAGAGCTGCTTACAACAACCCTGAGAGAGCTGTTGAATATTTGTATACGGGTATCCCTGAGCAAGCTGAAGCTCCACCTGTGGCCCGAGTGCCTACAAGTGTACAACCTACAAATCCACCAGCTGCTGCACCTCAGGCAGCTTCACCTCAAGCAGCACAACCAGCTCCTGTCACAACTAGTGGACCAAATGCTAATCCTCTAGACCTATTTCCCCAGGGTCTCCCCAATGTTGGTTCTGGTGCTGCTGGCGCCGGCTCTTTAGAATTTCTGCGCAACAGCCAACAGTTCCAAGCCTTGCGAGCTATGGTGCAGGCTAACCCACAAATATTGCAGCCTATGCTACAAGAGCTTGGCAAACAAAATCCTCATCTTATGAGATTGATTCGAGATCATCAAGCTGATTTCCTTCGACTGATAAATGAACCTGTGGAGGGTGGTGAGGGGAATTTATTTGGCCAGCTAGCTGCTGGCATGCCACAATCAGTAACTGTTACACCTGAAGAGCGCCAAGCAATTGAACGTCTTGAAGCAATGGGCTTTGATCGTGCACTTGTGTTGGAGGTGTATTTTGCTTGCAACAAGAACGAGGAATTGGCTGCCAACTACCTCTTAGATCACATGCACGAGTTTGACGAACAATAG 1254 0.488 MKVFVKTLKGTHFEIEVKPDDTVTEVKKNIETVQGANVYPAAQQMLIHQGKVLKDGTTLEENKVAENSFIVIMLSKSKSTSGEGSTASTAPSSKAPQTSATPTPTPSVSVAPQAVPATAAPPAPSPSPSPSPAPAAPAPAAPAPAPAPSPAAAPTSTDTAVVGSDIYGQAASNLVAGSNLEGTIQQILDMGGGSWDRDTVIRALRAAYNNPERAVEYLYTGIPEQAEAPPVARVPTSVQPTNPPAAAPQAASPQAAQPAPVTTSGPNANPLDLFPQGLPNVGSGAAGAGSLEFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIRDHQADFLRLINEPVEGGEGNLFGQLAAGMPQSVTVTPEERQAIERLEAMGFDRALVLEVYFACNKNEELAANYLLDHMHEFDEQ* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4015 417 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 178 221 IPR015940 -
Amo19g4015 417 SMART CBM 289 332 IPR006636 -
Amo19g4015 417 MobiDBLite consensus disorder prediction 117 151 - -
Amo19g4015 417 Pfam XPC-binding domain 291 346 IPR015360 GO:0003684|GO:0006289|GO:0043161
Amo19g4015 417 CDD UBA1_Rad23_plant 174 223 - -
Amo19g4015 417 Gene3D - 1 80 - -
Amo19g4015 417 TIGRFAM rad23: UV excision repair protein Rad23 1 415 IPR004806 GO:0006289
Amo19g4015 417 SUPERFAMILY XPC-binding domain 288 353 IPR036353 GO:0003684|GO:0006289|GO:0043161
Amo19g4015 417 SMART uba_6 180 220 IPR015940 -
Amo19g4015 417 SMART uba_6 372 409 IPR015940 -
Amo19g4015 417 SUPERFAMILY UBA-like 351 415 IPR009060 GO:0005515
Amo19g4015 417 Gene3D - 173 223 - -
Amo19g4015 417 Gene3D - 282 347 IPR036353 GO:0003684|GO:0006289|GO:0043161
Amo19g4015 417 Pfam UBA/TS-N domain 372 407 IPR015940 -
Amo19g4015 417 Pfam UBA/TS-N domain 183 218 IPR015940 -
Amo19g4015 417 PRINTS DNA repair protein Rad23 signature 366 382 IPR004806 GO:0006289
Amo19g4015 417 PRINTS DNA repair protein Rad23 signature 317 339 IPR004806 GO:0006289
Amo19g4015 417 PRINTS DNA repair protein Rad23 signature 383 397 IPR004806 GO:0006289
Amo19g4015 417 PRINTS DNA repair protein Rad23 signature 398 413 IPR004806 GO:0006289
Amo19g4015 417 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Amo19g4015 417 MobiDBLite consensus disorder prediction 232 267 - -
Amo19g4015 417 CDD UBA2_RAD23_plant 368 410 - -
Amo19g4015 417 SMART ubq_7 1 75 IPR000626 GO:0005515
Amo19g4015 417 MobiDBLite consensus disorder prediction 77 158 - -
Amo19g4015 417 PANTHER UV EXCISION REPAIR PROTEIN RAD23-RELATED 1 416 - -
Amo19g4015 417 SUPERFAMILY Ubiquitin-like 1 80 IPR029071 -
Amo19g4015 417 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Amo19g4015 417 MobiDBLite consensus disorder prediction 77 112 - -
Amo19g4015 417 Gene3D - 364 411 - -
Amo19g4015 417 SUPERFAMILY UBA-like 177 229 IPR009060 GO:0005515
Amo19g4015 417 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 416 - -
Amo19g4015 417 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 369 410 IPR015940 -
Amo19g4015 417 CDD Ubl_Rad23 1 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4015 Amo-Chr19 156175313 156178954 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4015 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 39.189 3.22e-09 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4015 K10839 - gmx:100814162 568.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g4015 19 156175313 156178954 Amo19g4015 19 156175313 156178954 ECH