Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4001 ATGGCGGGCAAAGAAGAGAATCGAATATTCGTCGGAGGATTGTCATGGGACGTAACGGAGCGTCAGCTCGAGCATGCCTTTGGCCGTTACGGCAAAATTCTCGAATGCCAGATTATGATGGAAAGAGATACAGGCCGTCCACGTGGATTTGGGTTCATTACATTTGGAGACCGTAGGGGAATGGAGGATGCAATCAAGGAAATGCACGGACGAGAAATTGGTGACCGCATCATCTCAGTAAACAAGGCCCAGCCCAAGATGGGAGGTGATGACGTAGACCAAGGTTACAGAAGRGGCTACTCATCAGGAGGTAGAGGAAGCTATGGAGTTGGGGACAGGGTTGGACAAGATGATTGCTTCAAATGTGGGCATCCAGGGCACTGGGCCCGAGATTGTCCTTTGGCAGGAGGTGGCCGCGGCCGGGGTGGTAGTTCATTTTCCTCACGCCCTAGGTTTGGAGGTGCTGGTGGGGATCGCCTTAGTGGTGAACGTGATCGATACCTTGATGATCGCTATGATGGTGGACGTTATGGGGATAGGGATCGCTTTGATTCCCGAGATTACAAATATGGAAGTCGTGATCGTTATACTAGTGACAGGTATCCAACTAGTGGAGATCGATTTGCAAGTGATCGATATGGAGGAAGCTCAGATTACGCGCAAAATGGTTATGGCAAAGAAAGAGGTTATGACCGGTATGGTGGTCCACGAGGTGTTGGTGACAGGTATGGAAGTGGAATAGCAGCTCGTGACGAAGGAAGGAATTATAGGGGCAGGCCTGGTCCGTATGATCGACCAAGCAGGGGTGCTCGTCCGTCGTCATTTGACCGCTACTGA 837 0.5102 MAGKEENRIFVGGLSWDVTERQLEHAFGRYGKILECQIMMERDTGRPRGFGFITFGDRRGMEDAIKEMHGREIGDRIISVNKAQPKMGGDDVDQGYRRGYSSGGRGSYGVGDRVGQDDCFKCGHPGHWARDCPLAGGGRGRGGSSFSSRPRFGGAGGDRLSGERDRYLDDRYDGGRYGDRDRFDSRDYKYGSRDRYTSDRYPTSGDRFASDRYGGSSDYAQNGYGKERGYDRYGGPRGVGDRYGSGIAARDEGRNYRGRPGPYDRPSRGARPSSFDRY* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4001 278 SUPERFAMILY RNA-binding domain, RBD 4 109 IPR035979 GO:0003676
Amo19g4001 278 Gene3D - 117 154 - -
Amo19g4001 278 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Amo19g4001 278 SUPERFAMILY Retrovirus zinc finger-like domains 104 138 IPR036875 GO:0003676|GO:0008270
Amo19g4001 278 MobiDBLite consensus disorder prediction 139 278 - -
Amo19g4001 278 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Amo19g4001 278 SMART c2hcfinal6 118 134 IPR001878 GO:0003676|GO:0008270
Amo19g4001 278 PANTHER TRANSFORMER-2-RELATED 1 226 - -
Amo19g4001 278 MobiDBLite consensus disorder prediction 158 201 - -
Amo19g4001 278 Gene3D - 1 116 IPR012677 -
Amo19g4001 278 ProSiteProfiles Zinc finger CCHC-type profile. 119 133 IPR001878 GO:0003676|GO:0008270
Amo19g4001 278 Pfam Zinc knuckle 119 133 IPR001878 GO:0003676|GO:0008270
Amo19g4001 278 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1B-LIKE 1 226 - -
Amo19g4001 278 SMART rrm1_1 8 81 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4001 Amo-Chr19 155961386 155966459 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4001 9 88 C2H2 Transcription Factor Family AT2G19380 43.750 1.19e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4001 - - gmx:100809519 461.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g4001 19 155961386 155966459 Amo19g4001 19 155961386 155966459 ECH