Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3995 ATGATTCTTCATATCAGCTCCATTCTGTTAATGTGGCTTCTGCTAAGTTCATTCTCTCCTCCAATCAAAGCTACCTTCAACCTCACCTTGCCCCACCAACACCCTTACCCTGAAGCTGTGGTTCATCAAGTTCAAAGGAAAATCAATGCTTCACTTTCAAGAAGGGAGGTTCTCTCGAAAGACCAATCCTCCGCCTGTCTCACCGGAAACCCCGTCGACGACTGTTGGCGGTGCGACCCAAACTGGTCAGCAAACCGGCAGAAGCTCGCCGACTGTGGCATCGGCTTTGGACGCGACGCAATGGGCGGAAAAGGCGGCCAGATCTACGTAGTAACCGACTCCTCCGACAGAGACCCGGCGAACCCCGTTCCCGGAACCCTCCGTCACGCGGTGATCCAAGACGTGCCACTCTGGATCGTTTTCTCCGGCGACATGACCATAGTCCTAAAACACGAACTAATCTTCAACAGCTACAAGACGGTGGACGGTCGCGGCGCCAACGTWCACGTCACCGGCCACGGCTGCATCACGCTCCAATACATCTCGAACGTGATCATCCACAACATCCACGTCCACCATTGCAAGCCCTCCGGCAACACCAACATAAGAGCCTCTCCGACGCACGTGGGGTGGAGGGGAGTCTCCGARGGCGACGGAATCTCCATCTTCGGGTCACGCAAGATCTGGATCGACCATTGCTCTCTCTCGTACTGTACGGACGGATTAATCGATGCCATAATGGGGTCGACGGGGATCACAATTTCAAACAACCATTTCGCGCACCACGACGAGGTGATGCTGTTGGGGCATAACGACAAGTACTTGCCGGATAAAGGAATGCAGGTCACCATCGCTTTCAACCACTTCGGTGAAGGTTTGGTTCAGAGAATGCCACGGTGCAGATTGGGATATATTCATGTTGTTAACAATGATTTCACTCAGTGGGAGATGTATGCAATCGGAGGCAGCGCTAACCCCACCATTAACAGCCAGGGTAACCGTTACACTGCTCCCGCCGATCCTAACGCCAAGGAGGTGACGAAGCGCGTGGACACGAATGAGGGGGAATGGAGCGATTGGAATTGGAGGACGGACGGGGACATAATGGTAAATGGAGCATTCTTTGTGCCATCTGGTGGTGGCATGAGTGCTCAGTATGCAGAGGCATCAAGCGTGCAACCCAAATCCGCCGTGCAAATCGACCATCTTACCATGTATTCCGGCGTGTTCGGTGATCCAAGGGACAATGGGGACTTATTTCCCGGTTACACCGGAGGTGGGACCGTGACGAGCGCCACCAACAAGGGTGGAAGCAGTGGTGGGTCCAGCGGTGGCGATGGTGGGGACTTCTTCGGGATGATATTCGGCGGTGGTAGCAGCCAAGCAGCACCACCACCCTCATCAATTCTTGTATTTGTTTCAACATTTTTGTCCCTTTTAATTATTTTCATTTTGGACACTACCACCAACCATGCTATTTTATTATCATTATTATGA 1497 0.5257 MILHISSILLMWLLLSSFSPPIKATFNLTLPHQHPYPEAVVHQVQRKINASLSRREVLSKDQSSACLTGNPVDDCWRCDPNWSANRQKLADCGIGFGRDAMGGKGGQIYVVTDSSDRDPANPVPGTLRHAVIQDVPLWIVFSGDMTIVLKHELIFNSYKTVDGRGANVHVTGHGCITLQYISNVIIHNIHVHHCKPSGNTNIRASPTHVGWRGVSEGDGISIFGSRKIWIDHCSLSYCTDGLIDAIMGSTGITISNNHFAHHDEVMLLGHNDKYLPDKGMQVTIAFNHFGEGLVQRMPRCRLGYIHVVNNDFTQWEMYAIGGSANPTINSQGNRYTAPADPNAKEVTKRVDTNEGEWSDWNWRTDGDIMVNGAFFVPSGGGMSAQYAEASSVQPKSAVQIDHLTMYSGVFGDPRDNGDLFPGYTGGGTVTSATNKGGSSGGSSGGDGGDFFGMIFGGGSSQAAPPPSSILVFVSTFLSLLIIFILDTTTNHAILLSLL* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3995 498 SUPERFAMILY Pectin lyase-like 70 392 IPR011050 -
Amo19g3995 498 Gene3D - 69 411 IPR012334 -
Amo19g3995 498 PANTHER PECTATE LYASE 18-RELATED 8 431 IPR045032 GO:0030570
Amo19g3995 498 PRINTS Pollen allergen Amb family signature 318 337 IPR018082 -
Amo19g3995 498 PRINTS Pollen allergen Amb family signature 360 384 IPR018082 -
Amo19g3995 498 PRINTS Pollen allergen Amb family signature 152 168 IPR018082 -
Amo19g3995 498 PRINTS Pollen allergen Amb family signature 92 109 IPR018082 -
Amo19g3995 498 PRINTS Pollen allergen Amb family signature 389 412 IPR018082 -
Amo19g3995 498 PRINTS Pollen allergen Amb family signature 216 237 IPR018082 -
Amo19g3995 498 PRINTS Pollen allergen Amb family signature 116 141 IPR018082 -
Amo19g3995 498 PRINTS Pollen allergen Amb family signature 296 315 IPR018082 -
Amo19g3995 498 SMART amb_all 144 341 IPR002022 -
Amo19g3995 498 Pfam Pectate lyase 152 333 IPR002022 -
Amo19g3995 498 PANTHER PECTATE LYASE 8 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3995 Amo-Chr19 155894792 155898900 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3995 1 487 Polysaccharide Lyase AT3G53190 62.525 0.0 581
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3995 K01728 - gmx:100808438 835.484
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g3995 19 155894792 155898900 Amo19g3995 19 155894792 155898900 ECH