Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3981 ATGGGATCGGAAAGCGTGGTTCCGAAATGGGCTTCTCAGCCTTGCATTATGGGAATCGACGAAGCCGGTAGAGGCCCGGTTTTGGGTCCCATGGTCTATGCTTGCTTATACTGCGCTCGCTCCTACCAGAACACTCTTTCCTCTCTCAGTTTTGCAGATTCCAAAACCCTCAAAGAAGACAAGAGGGAAGAACTCTTTGAAGCTCTCAAATCCAATGACTCTCTTGCTTGGGCCGTTGACGTCATCGATCCCAGGGACCTCTCCGCTAAAATGCTCCAGAAGAACAAGATTAACTTGAATGAGATTTCACATGATTCTGCTATGGGCCTCATTCATAGGGTTCTCAAATTGGGAGTGCTCTTAACCGAGGTTTATATAGATACAGTTGGAGATCCAGGGAAATACGAAGTGAAGCTATCTAAAGTTTTTCCGTCTATCAAATTTGTTGTTGCAAAGAAGGCTGATAGTCTTTATCCTGTTGTTAGTGGTGCAAGTATTGTTGCAAAGGTCACAAGGGACAGGGCTTTAAGAGATTGGGTTCTTGATGAGAGTGTCAAAAACATGCACAGAAACTTTGGCTCTGGATATCCTGGAGATCCCCAAACCAAGTCTTGGCTAGAAGATCACAAGCATCCGATCTTTGGATTTCCGACATTGGTCCGGTTTAGTTGGGGAACCTGCAATACCTATTTTAAAGATGGTGCGGAGGTCTTATGGGAGTCTGACAAAACGGATGAAGATGGTGGCAACAATAACAGCAATGGCAAGCGGCAGTTGAAGCTAAGCCATGTGGGTTTCACCACATCCAAGAGGAGAAGTGAAGAAATAGAATCAAGTGGTAAAGGACGCTGTAGGTTTTTCCAGTCCAGGAAACTTGAGCAACTCACTTATTTCCAAAAATAA 903 0.4474 MGSESVVPKWASQPCIMGIDEAGRGPVLGPMVYACLYCARSYQNTLSSLSFADSKTLKEDKREELFEALKSNDSLAWAVDVIDPRDLSAKMLQKNKINLNEISHDSAMGLIHRVLKLGVLLTEVYIDTVGDPGKYEVKLSKVFPSIKFVVAKKADSLYPVVSGASIVAKVTRDRALRDWVLDESVKNMHRNFGSGYPGDPQTKSWLEDHKHPIFGFPTLVRFSWGTCNTYFKDGAEVLWESDKTDEDGGNNNSNGKRQLKLSHVGFTTSKRRSEEIESSGKGRCRFFQSRKLEQLTYFQK* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3981 300 ProSiteProfiles Ribonuclease (RNase) H type-2 domain profile. 14 236 IPR024567 GO:0004523
Amo19g3981 300 Pfam Ribonuclease HII 17 227 IPR024567 GO:0004523
Amo19g3981 300 Gene3D - 2 186 IPR036397 GO:0003676
Amo19g3981 300 Gene3D Ribonuclease hii. Domain 2 187 236 IPR023160 GO:0004523
Amo19g3981 300 TIGRFAM TIGR00729: ribonuclease HII 16 229 IPR004649 GO:0004523|GO:0016070
Amo19g3981 300 PANTHER RIBONUCLEASE H2 SUBUNIT A 5 298 IPR001352 GO:0003723|GO:0004523
Amo19g3981 300 MobiDBLite consensus disorder prediction 242 261 - -
Amo19g3981 300 PANTHER RIBONUCLEASE 5 298 - -
Amo19g3981 300 SUPERFAMILY Ribonuclease H-like 15 232 IPR012337 -
Amo19g3981 300 CDD RNase_HII_eukaryota_like 17 236 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3981 1 298 Core DNA Replication Machinery Family AT2G25100 65.772 1.44e-147 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3981 K10743 - gmx:100779875 515.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g3981 19 155707873 155710226 Amo19g3981 19 155707873 155710226 ECH