Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3965 ATGCGGGTTATCCAGAATTCTGATTCAGTTTTGGAAGATCCAGATGCGGAGGTGATAGCACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTTATATGTGAGGTATGCAACAAAGGGTTCCAAAGGGAGCAAAACCTACAGCTCCACAGAAGAGGACACAACCTGCCTTGGAAGCTTAAGCAGAAGACTACAAAAGAGCCTAAGAGGAAGGTTTATCTCTGCCCTGAGCCCACATGCGTCCACCATGACCCTTCTCGTGCTCTTGGTGACCTCACTGGCATCAAGAAGCACTACTCTCGCAAACATGGCGAGAAGAAGTGGAAGTGCGACAAGTGTTCCAAGAAGTACGCTGTTCAATCCGATTGGAAAGCTCATTCCAAGACCTGTGGCACTAGAGAATACAGATGTGATTGTGGAACTCTCTTCTCCAGGAGAGACAGTTTCATCACCCACAGAGCTTTCTGCGATGCATTGGCTCAAGAAAGTGCAAGGCAGCCACCGAACCTGAACAACGCCATTGGAACCCACCTTTATGGAAGCACCAACAACAACATGGCCCTAGGCTTATCTCAGGTGGGTATGGGTATGGGTGTTGGTGTTGGTGTTGGTGTTGGTGTAGGTGTGGGTGTGGGTCCACAACAGATACCCACCGCCATGCAAGAATCTAGCACTGATCTCTTGCGTCTTAGTGGTCGAACCGGTCAATTAGACCATCACATGCTTCCACCACCACCATCATCCTTTAGAACTTCACACCATCAACCATTCTTCATGAATGATCATCAAAACTTCCATGGCCACCAGGGACTCATGCAACTATCTGATCTTAACAACAATAACAACAACAGCATGGATAATAATTCTCCATCAGGAGGAGGAGGAGGAGCTAATAATAATAGTAGTAACAACAATAATAATAATAATAACAGTAACCTCTTCAACCTTCCATTCCTTTCAAGCAACAGCACTAACAGCAGCAACAACTCTTTCTCTGATCAGCATGGTAACAACAACAACAACAATGAAGGGAACAACAGTTTCTTCACCGGTGCAGGTGGAAGTGCTATAATGCACCAAACAACCTCATCAACTGCACCATCACTCTTCAGCAATTCCCTCGAAACAAGCAACAACAACAACAACAGCGGTTCCATTTCTCACATGTCCGCAACTGCACTCCTTCAGAAAGCAGCACAAATGGGTGCAACTACAAGCAACAGCACCGCCTCACTCCTCAAGAGCTTCGGAGCCACTTCCACAACCAGCGCAGCTGCAAAACCACCTCATGATCATCATCATCACCTGAGGGCGGCAACAATGGTGAGCAATGCTGCTGCTGCAGCAAACTATGGAAGCATATTCGGGTCAGGGAGCGAGCAGGGTAACCTCCAGGATCTGATGAACTCGTTTGCCACTGTAGCTTCCGCTGGACACTCTTCTTCCATGTTCGAAAGCGGTGGAGGTTCTTCTGTAGGGCTTATGGCTGGGTTTGATCATGCATACGATCATAGCTCAAACAGTAGGGAGCATAAGCTGCATGGAGTGAGCATTGGTGGTGGCTCCGATGGGCTCACTAGGGACTTTCTCGGTGTTGGTCAAATGGTTAGAACCATGAGCAGTGGCGGCGGCGGTGGAGGCGGCGGTGGAGGAGGAGTTTCTCGAAGAGAACAACAGCAACAACATTGCTTCACGTTGAGCTCGATGGAAGCTGAAAGGAATAGTAATGCTGCGCCGTCAGGGCAATCTTTCGGTAGTAGTGGCGGTGGAGGAGGGAATTTTCAGTGA 1788 0.4838 MRVIQNSDSVLEDPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARQPPNLNNAIGTHLYGSTNNNMALGLSQVGMGMGVGVGVGVGVGVGVGPQQIPTAMQESSTDLLRLSGRTGQLDHHMLPPPPSSFRTSHHQPFFMNDHQNFHGHQGLMQLSDLNNNNNNSMDNNSPSGGGGGANNNSSNNNNNNNNSNLFNLPFLSSNSTNSSNNSFSDQHGNNNNNNEGNNSFFTGAGGSAIMHQTTSSTAPSLFSNSLETSNNNNNSGSISHMSATALLQKAAQMGATTSNSTASLLKSFGATSTTSAAAKPPHDHHHHLRAATMVSNAAAAANYGSIFGSGSEQGNLQDLMNSFATVASAGHSSSMFESGGGSSVGLMAGFDHAYDHSSNSREHKLHGVSIGGGSDGLTRDFLGVGQMVRTMSSGGGGGGGGGGGVSRREQQQQHCFTLSSMEAERNSNAAPSGQSFGSSGGGGGNFQ* 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3965 595 MobiDBLite consensus disorder prediction 539 595 - -
Amo19g3965 595 MobiDBLite consensus disorder prediction 235 385 - -
Amo19g3965 595 ProSiteProfiles Zinc finger C2H2 type domain profile. 32 54 IPR013087 -
Amo19g3965 595 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 13 542 - -
Amo19g3965 595 Gene3D Classic Zinc Finger 86 165 - -
Amo19g3965 595 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 13 542 - -
Amo19g3965 595 ProSitePatterns Zinc finger C2H2 type domain signature. 34 54 IPR013087 -
Amo19g3965 595 SMART c2h2final6 32 54 IPR013087 -
Amo19g3965 595 SMART c2h2final6 73 103 IPR013087 -
Amo19g3965 595 SMART c2h2final6 108 128 IPR013087 -
Amo19g3965 595 MobiDBLite consensus disorder prediction 266 385 - -
Amo19g3965 595 SUPERFAMILY beta-beta-alpha zinc fingers 31 128 IPR036236 -
Amo19g3965 595 MobiDBLite consensus disorder prediction 554 595 - -
Amo19g3965 595 Pfam Zinc-finger double-stranded RNA-binding 32 54 IPR022755 -
Amo19g3965 595 Gene3D Classic Zinc Finger 11 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3965 Amo-Chr19 155544341 155548754 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3965 11 165 IDZ Gene Family AT3G50700 85.161 1.19e-103 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo19g3965 zf-C2H2_jaz 3.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3965 K25870 - gmx:100786121 505.753