Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3952 ATGGCAACTTGTGGAAGAGAAGGAGCWGTGAGACAGTACATAAGATCCAAGGTTCCTCGTTTGAGATGGACTCCTGAGCTTCATCGATGCTTTGTTCATGCCATTGATAGCCTTGGAGGTCATCACAAGGCTACCCCTAAGCTTGTTCTTCAGTTGATGGACGTTAAAGGCCTCACAATTTCACACGTCAAGAGCCATCTTCAGATGTACAGAAGCATGAGGGGTGACTTGGGAAGACAAGGTAGGATTTCATCAAGCCAACATAGGAACCAATCTTTTGAGGAACATGATGATGGATGTGTTGAAGAAGTGAATGATGTTAATAATAACAATAATAATCATAATCAAAACTATCATCCATGTTCACAATCCATTGGAAAAGAATCCGATTCTCTCTTCGGATACAGTAACTTCTCCCCAAAAAGGGCTAGAATAGAGAGAAACTATTCCATATCTCAGAACCTGCAATGCAGGAACCAAAGAACAGTGCCYTATCCGTACTCCTTTTATGATTATGCTTATTCAACTCAACAACAACAACATCAACCACCTCATTCCACAGTTTTCCCTATGCTGCCACCACTTCTTGGAAATTTCCTCCAGGTTACTAAATTAAATGATAGAGAGACCACTTCGGAGCCAATGACTAATAATAATAATAATAATAATAATAATAATGTACTTTTGAACATCAACAAAAACAACAACACTGAAAAGAAGGCACGTGCAGAAGAAGATGAAGATGAAGATGTAGGGAGAGAGTGTGAGTTGTCATTGTCTCTCACATTGCCAAATCCTTCACCCCAGAGAAGTAGTAATGTTTCTTCAGCCAGTGAGATCACTGAGGCTGCTATCTCTTCATCATGTTCCACTACTCTCAAACATAGGATTAATTTAGACTTGTCTCTATCCCTTTGTTGA 921 0.3963 MATCGREGAVRQYIRSKVPRLRWTPELHRCFVHAIDSLGGHHKATPKLVLQLMDVKGLTISHVKSHLQMYRSMRGDLGRQGRISSSQHRNQSFEEHDDGCVEEVNDVNNNNNNHNQNYHPCSQSIGKESDSLFGYSNFSPKRARIERNYSISQNLQCRNQRTVPYPYSFYDYAYSTQQQQHQPPHSTVFPMLPPLLGNFLQVTKLNDRETTSEPMTNNNNNNNNNNVLLNINKNNNTEKKARAEEDEDEDVGRECELSLSLTLPNPSPQRSSNVSSASEITEAAISSSCSTTLKHRINLDLSLSLC* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3952 306 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 2 181 - -
Amo19g3952 306 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 175 306 - -
Amo19g3952 306 MobiDBLite consensus disorder prediction 209 230 - -
Amo19g3952 306 SUPERFAMILY Homeodomain-like 17 72 IPR009057 -
Amo19g3952 306 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 19 72 IPR006447 GO:0003677
Amo19g3952 306 Gene3D - 18 74 - -
Amo19g3952 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 75 IPR017930 -
Amo19g3952 306 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 175 306 IPR044848 GO:0003700
Amo19g3952 306 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 2 181 IPR044848 GO:0003700
Amo19g3952 306 Pfam Myb-like DNA-binding domain 21 71 IPR001005 -
Amo19g3952 306 MobiDBLite consensus disorder prediction 78 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3952 Amo-Chr19 155385303 155389519 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3952 1 74 G2-like Transcription Factor Family AT1G14600 73.418 3.00e-35 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Amo19g3952 Myb_DNA-binding 1.2e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3952 - - ahf:112712187 535.413