Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3951 ATGTCTTCTCATCTTCACCAAGGGAATGCTGTCATGCCTATTCTCTTCTTCAAGATTATACTCAAAACTAACCTTAAAATTCTTAAAATACCCAACAAATTTGCACTGAAACATGGAAGTGGTTTGTCCAATCCAGTGTTCTTAAAGCCTCCAGATGGAACAAGGTGGAAGGTGTGTTTGAGCAAAAAGGATGATCAAGTTTGGTTTGAAAAGGGTTGGAAAGAATTCACTCAAAATTACTCTCTGGATCATGGATGCTTGGTTCTGTTTAAATATGAAGGAACTACTTCTTCCCAATTTGATGTCATTATAATTGATGACAGTGATTTAGAAATAGACTATTCTTCCTACAATGGAAATGATGATGATGATGATGTTTCAGTTCAGATTGTGAAGGAAATCCATCCATACAAGAAGAACAAAGAAACCATGAGAGGTGAGAAGAATGTGACTACTTCTTTGTCATTGAATCGGCCAAGGGAACCAAGAGCACGAGAAGAAGCTAACAAATTCGTATCTAACAACCCTTTTTTCACGGTGCTCATAAAGCCTCCTCATATCACACAATACCGACTGTGCATACCAGTTTTGGAAGGTTATGTGGATAATGAAGTGAAGAATGTGAAGCTTGAGTATGGGGATAGATCGTGGCCTGTGAAGATGCTTAGTTGTAACAAAATCTATACAAATCGCTTCCTTTCTGCTGGGTGGAACTTATTTGCACAAGAGAATGAGTTGAAGCCTGGAGATGTTTGTGTCTTTGAACTTGTTAATATGCAAGATTTGGTCTTTAAGGTTCATGTTGTTGCTGCCCATCATGCTTAA 825 0.3806 MSSHLHQGNAVMPILFFKIILKTNLKILKIPNKFALKHGSGLSNPVFLKPPDGTRWKVCLSKKDDQVWFEKGWKEFTQNYSLDHGCLVLFKYEGTTSSQFDVIIIDDSDLEIDYSSYNGNDDDDDVSVQIVKEIHPYKKNKETMRGEKNVTTSLSLNRPREPRAREEANKFVSNNPFFTVLIKPPHITQYRLCIPVLEGYVDNEVKNVKLEYGDRSWPVKMLSCNKIYTNRFLSAGWNLFAQENELKPGDVCVFELVNMQDLVFKVHVVAAHHA* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3951 274 CDD B3_DNA 177 268 IPR003340 GO:0003677
Amo19g3951 274 ProSiteProfiles B3 DNA-binding domain profile. 13 108 IPR003340 GO:0003677
Amo19g3951 274 Pfam B3 DNA binding domain 25 103 IPR003340 GO:0003677
Amo19g3951 274 Pfam B3 DNA binding domain 177 267 IPR003340 GO:0003677
Amo19g3951 274 SUPERFAMILY DNA-binding pseudobarrel domain 173 269 IPR015300 -
Amo19g3951 274 SMART B3_2 177 270 IPR003340 GO:0003677
Amo19g3951 274 SMART B3_2 16 108 IPR003340 GO:0003677
Amo19g3951 274 Gene3D - 158 273 IPR015300 -
Amo19g3951 274 Gene3D - 13 109 IPR015300 -
Amo19g3951 274 CDD B3_DNA 15 106 IPR003340 GO:0003677
Amo19g3951 274 ProSiteProfiles B3 DNA-binding domain profile. 177 272 IPR003340 GO:0003677
Amo19g3951 274 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 12 270 - -
Amo19g3951 274 SUPERFAMILY DNA-binding pseudobarrel domain 15 106 IPR015300 -
Amo19g3951 274 PANTHER B3 DOMAIN-CONTAINING 12 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3951 Amo-Chr19 155280502 155282369 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3951 120 266 B3 DNA Binding Superfamily AT3G18990 33.766 8.07e-15 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo19g3951 B3 5.6e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3951 - - lang:109346569 250.366