Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3942 ATGTCTTCTTCTTCTAAGTGGCGTGGCAAGGCTATAATCCCTGTTCATTTCTCAGCCATTATCTTCAAGAAAACTGATCTTCAAACTCTGAAAATATCAAGCAAATTTACAAGGAGATATGGAGATGGTTTGTCGAATCCAATGTTTTTGAAGCCTCCAGATGGCACCAAATGGGAAGTGAATTGGACTAGAAAAAATGAAGATGAGGTTTGGTTCGAAAAGGGTTGGAACAAATTCACTCAAAACTACTCCTTAGATGATGGCCACTTGATTCTTTTCACCTATCATGGAAATTCACAACTTGATGTTCACATCTTTGACAAATCTGCCTCTGAAATACTCTATCCGGGGTTAAACACTACTCCTACTACTGCTTGTGATGATGAAAAGAACATCAAACTTGATCTCATGCACAATGATGATGATGATGATGACTCAATTGAGATTTTGAAGCCTTGTAAACACAAACGCAGCATGCTAGTGTTGGTTCCTCAACCTTGTAATAAAAGAATGAAAGATAAGAAGAAGGTTGCTGAAAGAAGATCAAGTTGTTCATCATTGAATTGGCCAAAGCAAGAAAGAGCACAGGAAGTAGCTATGAACTTCGTGTCTGATAATCCTTTCTTCACAATGTTCATAACCCATGTCCATCTAGCACACTACAAAGCGGCTGTGCCAAACATGAAAGAGTACATGATTGATGAGGAGGAGAAGAATGTGGAGCTGAAAATTGGGGAGAAATCGTGGGAAGTGAAACTGAGGCGTTGTAGCAAGTCGTCAAATTATCGGTACTTGGGTGGTGGCTGGTCCTTGTTTGCACAGGAGAGTGAATTGCTTCCTGGAGACGTTTGTGTCTTTGAACTCATCAAAATGCACCCTTTGCAGTTTAAGGTTCATGTTTTCAAAAAGCAGCAGACTTAG 921 0.3996 MSSSSKWRGKAIIPVHFSAIIFKKTDLQTLKISSKFTRRYGDGLSNPMFLKPPDGTKWEVNWTRKNEDEVWFEKGWNKFTQNYSLDDGHLILFTYHGNSQLDVHIFDKSASEILYPGLNTTPTTACDDEKNIKLDLMHNDDDDDDSIEILKPCKHKRSMLVLVPQPCNKRMKDKKKVAERRSSCSSLNWPKQERAQEVAMNFVSDNPFFTMFITHVHLAHYKAAVPNMKEYMIDEEEKNVELKIGEKSWEVKLRRCSKSSNYRYLGGGWSLFAQESELLPGDVCVFELIKMHPLQFKVHVFKKQQT* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3942 306 ProSiteProfiles B3 DNA-binding domain profile. 15 109 IPR003340 GO:0003677
Amo19g3942 306 PANTHER B3 DOMAIN-CONTAINING 13 303 - -
Amo19g3942 306 Gene3D - 14 111 IPR015300 -
Amo19g3942 306 Gene3D - 187 305 IPR015300 -
Amo19g3942 306 SMART B3_2 22 109 IPR003340 GO:0003677
Amo19g3942 306 SMART B3_2 208 304 IPR003340 GO:0003677
Amo19g3942 306 CDD B3_DNA 21 107 IPR003340 GO:0003677
Amo19g3942 306 Pfam B3 DNA binding domain 27 108 IPR003340 GO:0003677
Amo19g3942 306 Pfam B3 DNA binding domain 228 303 IPR003340 GO:0003677
Amo19g3942 306 SUPERFAMILY DNA-binding pseudobarrel domain 19 109 IPR015300 -
Amo19g3942 306 CDD B3_DNA 228 302 IPR003340 GO:0003677
Amo19g3942 306 ProSiteProfiles B3 DNA-binding domain profile. 208 304 IPR003340 GO:0003677
Amo19g3942 306 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 13 303 - -
Amo19g3942 306 SUPERFAMILY DNA-binding pseudobarrel domain 204 303 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3942 Amo-Chr19 155179159 155180307 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3942 17 302 B3 DNA Binding Superfamily AT3G18990 27.988 7.11e-27 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo19g3942 B3 6.4e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3942 - - aip:107616196 617.846